1 10819768 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 2 10819768 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 3 1885564 functional \N UGAUCAGUAUA \N \N \N 1 not direct binding \N \N \N \N \N \N \N 4 10669759 UV cross-linking \N UGAUCAGUAUA \N \N \N \N \N \N \N \N \N \N \N \N 5 11410654 SELEX 7 rounds of selection (Y(U)(n))(n) ENSG00000092345_11410654_7rounds.txt \N \N \N \N \N \N 0 \N \N \N \N 6 7736592 EMSA \N UURURURUU \N \N \N \N \N \N \N \N \N \N \N \N 7 16938098 SELEX \N \N ENSG00000149187_16938098.txt \N \N \N \N \N \N 0 \N \N \N \N 8 8789448 EMSA \N (CUG)(n) \N \N \N \N \N \N \N \N \N \N \N \N 9 8912635 EMSA \N (CUG)(n) \N \N \N \N \N \N \N \N \N \N \N \N 10 8948631 EMSA \N (CUG)(n) \N \N \N \N \N \N \N \N \N \N \N \N 11 18039683 biosensor analysis \N (UG)(n) \N \N \N \N \N \N \N \N \N \N \N \N 12 18719244 UV cross-linking \N CACYGCA \N \N \N \N \N \N \N \N \N \N \N \N 13 9880507 UV cross-linking \N CACCCACCCACAUACAUACAU \N \N \N \N \N \N \N \N \N \N \N \N 14 12447348 UV cross-linking \N (CA)(n) \N \N \N \N \N \N \N \N \N \N \N \N 15 12874115 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 16 12874115 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 17 1653174 UV cross-linking \N UUUUUAAU \N \N \N \N \N \N \N \N \N \N \N \N 18 8665866 EMSA \N UUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 19 8665866 EMSA \N UUUUUAAUUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 20 2145153 functional \N UUUUUUAUAAAG \N \N \N 1 not direct binding \N \N \N \N \N \N \N 21 19250905 SELEX sequence data not released \N \N \N \N \N \N \N \N \N \N \N \N \N 22 19250905 genome-wide in vivo immunoprecipitation RIP-chip; Hrb87F \N \N GSE13941 \N \N \N \N \N \N \N \N \N Exp22.zip 23 7510636 SELEX \N UAGGGW ENSG00000135486_7510636.txt \N \N \N \N ENSG00000135486_7510636_aligned.txt ENSG00000135486_7510636_motif.txt 1 23_7510636_1444_HNRNPA1_RRMx2_logo.png 23_7510636.pwm 23_7510636.pfm \N 24 7908267 SELEX AAAAA ENSG00000070756_7908267.txt \N \N \N \N ENSG00000070756_7908267_aligned.txt ENSG00000070756_7908267_motif_1.txt 2 24_7908267_1262_PABPC1_RRMx4_logo.png 24_7908267.pwm 24_7908267.pfm \N 951 12324455 SELEX \N UUAUUUAWW 12324455_TTP.txt \N \N \N \N 12324455_TTP_aligned.txt 12324455_TTP_motif_1.txt 2 951_12324455_1405_ZFP36_Znf_CCCHx2_logo.png 951_12324455.pwm 951_12324455.pfm \N 26 16356927 EMSA \N AAAAAAUCCAAAAAAAAUCUAAAAAAAUCUUUUAAAAAACCCCAAAAAAAUUUACAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 27 8524242 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 28 8524242 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 29 11359897 SELEX \N R(U)(1-3)AGU ENSG00000135097_11359897.txt \N 1 \N \N \N \N 0 \N \N \N \N 30 8660864 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 31 11333984 SELEX \N G(U)(3-6)(G/AG) FBgn0011666_11333984.txt \N \N \N \N \N \N 0 \N \N \N \N 32 19258308 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE12171 \N \N \N \N \N \N \N \N \N Exp32.zip 33 16763568 EMSA \N AUUCCAAAUGUGAAUAUAUAGUUU \N \N \N \N \N \N \N \N \N \N \N \N 34 15781475 genome-wide in vivo immunoprecipitation RIP-chip; paper contains list of genes only GGAGG \N see supplementary info \N \N \N \N \N \N \N \N \N Exp34.zip 35 18234721 UV cross-linking sequence is from PMID:11152641 CGUUUAAAUAGCGCCUGGCGCGUUCGAUUUUAAAGAGAUUU \N \N \N \N \N \N \N \N \N \N \N \N 36 12574126 SELEX \N GCAUG 12574126.txt \N \N \N \N 12574126_aligned.txt 12574126_motif.txt 1 36_12574126_2570_a2bp1_RRMx1_logo.png 36_12574126.pwm 36_12574126.pfm \N 37 16537540 SELEX \N UGCAUG ENSG00000078328_16537540.txt \N \N \N \N ENSG00000078328_16537540_aligned.txt ENSG00000078328_16537540_motif.txt 1 37_16537540_1276_A2BP1_RRMx1_logo.png 37_16537540.pwm 37_16537540.pfm \N 38 16537540 protein affinity purification biotinylated RNA UGCAUG \N \N \N \N \N \N \N \N \N \N \N \N 39 12419250 SELEX sequence data not released ACAAAGACAAA \N \N \N \N \N \N \N \N \N \N \N \N 41 18794844 EMSA \N GACAAA \N \N \N \N \N \N \N \N \N \N \N \N 42 18794844 EMSA \N AGACAA \N \N \N \N \N \N \N \N \N \N \N \N 43 7761834 SELEX \N \N ENSG00000011304_7761834.txt \N \N \N \N \N \N 0 \N \N \N \N 44 7761834 SELEX \N \N ENSG00000063244_7761834.txt \N \N \N \N \N \N 0 \N \N \N \N 45 7761834 SELEX \N \N FBgn0003659_7761834.txt \N \N \N \N \N \N 0 \N \N \N \N 46 9214659 SELEX \N UCUU ENSG00000011304_9214659.txt \N \N \N \N \N \N 0 \N \N \N \N 47 19654240 EMSA \N GCCCUCUCUCCCGCCGCCCGCCCGCCACCCGCCAGCCCAGGUGCCCGCCCGCCAGUCAGCUAGUCCGUCGGUCCGCGCGUCCCUCUGUCCCGGAGCCCGCAGAUCGCGACCCAGAGCGCGCGGGGCCGAGAGCCGAGAGACAGUCCCGGGCGCAGCGCGGAGCUCCGGGCCCCGAGAUCC \N \N \N \N \N \N \N \N \N \N \N \N 48 19226116 EMSA \N GGCAACCUCACCUUCUCUCUGCUUCUCUCUCGCUGGCCCUAGGAGGAAGGUGCCAUCGAUGUCAGGUGUGUACCGAGG \N \N \N \N \N \N \N \N \N \N \N \N 49 19226116 EMSA \N GGAUCCUUCUCUCUGCUUCUCUCUCGCUGGCCUUAGGAGG \N \N \N \N \N \N \N \N \N \N \N \N 50 19226116 EMSA \N GGGAUCGCUUCGCUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCUCCACCGCCCCUGUGUGUUUCAGCUCUCUCCCCGUCCCUUUAGCUUACCCUGCAUCCCACCUGUAUGAGCCGUACCC \N \N \N \N \N \N \N \N \N \N \N \N 51 19226116 EMSA \N GGAGACUUGGUGGCUCCAUCUUAGCCCUA \N \N \N \N \N \N \N \N \N \N \N \N 52 17466948 EMSA \N GGGUCUUUGUCCUCUGUACUGUCUCUCUCCUUGCCCCUAACCCAAAAAGCUUCAUUUUUCUGUGUAGGCUGCACAAGAGCCUUGAUUGAAGAUAUAUUCUUUCUGAACAGUAUUUAAGGUUUCCAAUAAAAUGUACACCCCUCAG \N \N \N \N \N \N \N \N \N \N \N \N 53 17137510 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE6021 \N \N \N \N \N \N \N \N \N Exp53.zip 54 17137510 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE6022 \N \N \N \N \N \N \N \N \N Exp54.zip 55 2533575 UV cross-linking \N UCCCUUUUUUUUCCACAG \N \N \N \N \N \N \N \N \N \N \N \N 56 9436911 EMSA \N GCACAUUUCAUUUAUAUUCUGUCCUUUCCCCUUUUUCUCCUCUUCUUUACCUCCUCCCUUUGGUUG \N \N \N \N \N \N \N \N \N \N \N \N 57 12517964 EMSA \N GUCUCUCUCUCUCAACCUCUUUCUUCCAAUCUCUCUUUCUCAAUCUCUCUGUUUCCCUUUGUC \N \N \N \N \N \N \N \N \N \N \N \N 58 20064465 genome-wide in vivo immunoprecipitation CLIP-seq \N \N GSE19323 \N \N \N \N \N \N \N \N \N \N 59 20160105 fluorescence methods fluorescence resonance energy transfer CUCUCU(A)(15-30)CUCUCU \N \N \N \N \N \N \N \N \N \N \N \N 60 20160105 fluorescence methods fluorescence resonance energy transfer GGUCUCU(A)(15)CUCU \N \N \N \N \N \N \N \N \N \N \N \N 61 20160105 fluorescence methods fluorescence resonance energy transfer GGCUCU(A)(15)UCUCU \N \N \N \N \N \N \N \N \N \N \N \N 62 20010808 UV cross-linking \N UCCUCCUCCUUCCCUCUUCCUUGCCCCCUCUUCCCUAAACCUUACAG \N \N \N \N \N \N \N \N \N \N \N \N 63 20080103 EMSA \N AUUUGUCUUAUUUUGUUUCUCUUUCUCUCCUUUCCUUUUCCUUCUUCUUAUUAAAAAAAAAAAAAACUACGCAAUUCUCUUUUCUGUCUACAAAUCCAAAGUAUACUGUUUUUGGAAUGGGCAUUUCACG \N \N \N \N \N \N \N \N \N \N \N \N 64 19861426 in vitro RNA pulldown RNA synthesized from pool of intronic and exonic RNAs CUCUC \N \N \N \N \N \N \N \N \N \N \N \N 65 19506027 UV cross-linking \N CACUAAGCUCGCUUUCUUGCUGUCC \N \N \N \N \N \N \N \N \N \N \N \N 66 19273590 UV cross-linking \N CCAUCCCCUCAGCUAGCAGGUGUGAGCGGCUUUCUGCCCGCAGUCUCUACACAGCUCAGCAUCCUGACGCCUCCUCCC \N \N \N \N \N \N \N \N \N \N \N \N 67 17698501 UV cross-linking \N UCUCCUUGUUUUGCUUUCGAUCUGGACUGUUCUCAGGCAAGCCGGGGAGUAACUUUUAGUUUUGCUCCUGCGAUUAUUCAACUGACGGGCUUUCAUUUCCAUUUCACACACCCUAGCAACACUUAUACCUUGCGGAAUUGUAUUGGUAGCGUGAAAAAAGCACACUGAGAGGGCACC \N \N \N \N \N \N \N \N \N \N \N \N 68 9234723 UV cross-linking \N ACCUCAGCCUCUCCUUCUCUCUGCUUCUCUCUCGCUGGCCCUUA \N \N \N \N \N \N \N \N \N \N \N \N 69 17592047 EMSA \N GGCGAGAAAUAACUCAUUUCUCCUUUUUUUCUUCUCUCUUCUGUCUGAAUUCUCCCUGUCUCCCUUCCUGUGGGCCAUGGGGCUCA \N \N \N \N \N \N \N \N \N \N \N \N 70 17592047 EMSA \N GGCUAUCUUUCCUGGGAACCUGCUUGGGUAUCCGCCUCCUCUCCCUCGUCACAUCUCACCUGUGGACUGGUCUUCUGCAUUUCUUUGCUCUG \N \N \N \N \N \N \N \N \N \N \N \N 71 17592047 EMSA \N GGGCCCUUCCUCUUUCUGCUGUCCUCCUGGCCUCUGCCUGGGCCCUCCUCCUCCCACCUGUCUGUCCCUCCUGUGUCUUGGCACCACUGCCCACAG \N \N \N \N \N \N \N \N \N \N \N \N 72 17548433 EMSA \N CUGGAUUAUUCAACUGAAUGCCUUUCCCAGAGAAUGAACUGGAUUAUUCAACUGAAUGCCUUUCCCAGAGAAUGAACUGGAUUAUUCAACUGAAUGCCUUUCCCAGAGAAUGAA \N \N \N \N \N \N \N \N \N \N \N \N 73 16982681 EMSA \N GAGUUUUCUCCUCUCUCAACUUGUUCUCUCUCCUUCUUUCCUCCUUCCCUGUGCUCCUUCCGCUCCCACCUUCUUCCCUUCAUCACCCCCUCCCCUGCCUGGUGGCCCCUGCUUGGGAUGUAGUAAA \N \N \N \N \N \N \N \N \N \N \N \N 74 16950790 UV cross-linking \N GCCUUGUGUACAGUUAUUUAUGCCUCUGUAUUUAAAAAACUAACACCCAGUCUGUUCCCCAUGGCCACUUGGGUCUUCCCUG \N \N \N \N \N \N \N \N \N \N \N \N 75 16950790 UV cross-linking \N UAACACCCAGUCUGUUCCCCAUGGCCACUUGGGUCUUCCCUGUAUGAUUCCUUGAUGGAGAUAUUUACAUGAAUUGCAUUUUACUUUAAUC \N \N \N \N \N \N \N \N \N \N \N \N 76 9292499 UV cross-linking \N CCUUUUCCUUCUUCUUAUUCCUUUUCCUUCUUCUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 77 9292499 UV cross-linking \N CUUCUUCGGAUGUUUUCUUCCAAG \N \N \N \N \N \N \N \N \N \N \N \N 79 17507659 protein affinity purification biotinylated RNA UUGUUUGAUUUCUUAAAGU \N \N \N \N \N \N \N \N \N \N \N \N 80 16179478 NMR RRM1 YCU \N \N \N \N \N \N \N \N \N \N \N \N 81 16179478 NMR RRM2 CUNN \N \N \N \N \N \N \N \N \N \N \N \N 82 16179478 NMR RRM3 YCUNN \N \N \N \N \N \N \N \N \N \N \N \N 83 16179478 NMR RRM4 YCN \N \N \N \N \N \N \N \N \N \N \N \N 84 16179478 NMR CUCUCU(N)(15)CUCUCU \N \N \N \N \N \N \N \N \N \N \N \N 85 16109372 UV cross-linking \N UUUGUCUUCUUCUUUU \N \N \N \N \N \N \N \N \N \N \N \N 86 15341728 NMR RRM1/2 CUUCUCUCU \N \N \N \N \N \N \N \N \N \N \N \N 87 15010470 UV cross-linking \N GUCUCUUAUCUCUUCUGCAGGCUUUAUACCUUCUACCUUUCUCCUUCUAAUUUUUUUUCCUCUCUCUCUUUAAACACCAUUUAUUCUCUGACCUGGGCGCUUCACCGCUUCUCUUCCACGCUGUCUGAUUCCUCAUCUUGUUUCCUGGAUGGUGGUUUCUUGCCAAUGUCUCCAACCCUUUCCUCUGAAAUUUUCUUCCCUACCUUUGCCUUCCCUACUCGUUUUUUUUAAAUUAUUUUAUUUGCUUUACAUUUCUUUGUCCUACCCCUCCAUUUUUUUGCCCCUACUACCCUCCUCUUUUGUGCCACCUUCACUAUGAGCAGAUGAGCUGUAUGCUCAGAAACUG \N \N \N \N \N \N \N \N \N \N \N \N 88 12649496 UV cross-linking \N CGGCGAGAAAUAACUCAUUUCUCCUUUUUUUCUUCUCUCUUCUGUCUGAAUUCUCCCUGUCUCCCUUCCUGUGGGCCAUGGGGCUCA \N \N \N \N \N \N \N \N \N \N \N \N 89 11788707 NMR UCUU \N \N \N \N \N \N \N \N \N \N \N \N 90 11788707 NMR \N CUUC \N \N \N \N \N \N \N \N \N \N \N \N 91 11788707 NMR \N UCUUC \N \N \N \N \N \N \N \N \N \N \N \N 92 11788707 NMR \N UCUUU \N \N \N \N \N \N \N \N \N \N \N \N 93 11788707 NMR \N UCUCU \N \N \N \N \N \N \N \N \N \N \N \N 94 11788707 NMR \N CUCUCU \N \N \N \N \N \N \N \N \N \N \N \N 95 11788707 NMR \N UCCUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 96 11788707 NMR \N UCUUCUCU \N \N \N \N \N \N \N \N \N \N \N \N 97 11788707 NMR \N UCUUCUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 98 11931771 UV cross-linking \N CCUCUGCGCUUCUUCCCUUCCCUCCUCCCUGGCUCAG \N \N \N \N \N \N \N \N \N \N \N \N 99 11931771 UV cross-linking \N AGUUACUGCACCUUUCUUUGUUCCAUCUCUCCACCUCUGCUGUGAAAUA \N \N \N \N \N \N \N \N \N \N \N \N 100 11931771 UV cross-linking \N CGCUUUCCUUUCAUUCUUUCACUUCUCUGCUGCUUUU \N \N \N \N \N \N \N \N \N \N \N \N 101 10856256 NMR 0.17 uM UUUCUCCUCUUCUUU \N \N \N \N \N \N \N \N \N \N \N \N 102 9436911 EMSA \N GCACAUUUCAUUUAUAUUCUGUCCUUUCCCCUUUUUCUCCUCUUCUUUACCUCCUCCCCUUUGGUUG \N \N \N \N \N \N \N \N \N \N \N \N 103 10037806 UV cross-linking \N UUUCCUGUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUCUUUUUUUUUUUUUUUUUCCUUUUUUUUUUUUUUUUUUUUCUUUCCUUCUUUUUUCCUUUCUUUCCUUCCUUCUUUAAU \N \N \N \N \N \N \N \N \N \N \N \N 104 9858533 EMSA \N GCCUGCUGCUCCUCUUCUGUC \N \N \N \N \N \N \N \N \N \N \N \N 105 9261396 UV cross-linking \N GCAGCCUGGUGCCUCCCUCUUGGCCC \N \N \N \N \N \N \N \N \N \N \N \N 106 7717979 UV cross-linking \N UAAUUACACGCUUUCUGUUUCUCUCGCUGCUGUUCUCUCCCGCUGUGCGCCUGCCCGCCUCUCGCUGUCCUCUCUCCCCCUCGCCCUCUCCUCGGGCCCCCCCCUUUCACGUUCACUCUGUCUC \N \N \N \N \N \N \N \N \N \N \N \N 107 11003644 EMSA \N GGGAUCGACUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCUGG \N \N \N \N \N \N \N \N \N \N \N \N 108 18840686 EMSA \N ACUUGGCUCUUCUCUGCUUAUUAAC \N \N \N \N \N \N \N \N \N \N \N \N 109 10353602 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 110 11029660 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 111 15798215 EMSA \N CGGUUUAGUCAUCCAACAAGAAGAAAUGAAUAUGAAAUUCCAGCAA \N \N \N \N \N \N \N \N \N \N \N \N 112 10573156 EMSA \N GGCCUGAUCUGAGCCUGGGAGCUCUCUGGCC \N \N \N \N \N \N \N \N \N \N \N \N 113 19098458 genome-wide in vivo immunoprecipitation RIP-chip \N \N see supplementary info \N \N \N \N \N \N \N \N \N Exp113.zip 114 7499328 SELEX \N UAACAUC 7499328.txt \N \N \N \N 7499328_aligned.txt 7499328_motif.txt 1 114_7499328_2571_ybx2-a_CSDx1_logo.png 114_7499328.pwm 114_7499328.pfm \N 115 7499328 SELEX \N KAACAUCU 7499328_2.txt \N \N \N \N 7499328_2_aligned.txt 7499328_2_motif.txt 1 115_7499328_2571_ybx2-a_CSDx1_logo.png 115_7499328.pwm 115_7499328.pfm \N 116 7524668 EMSA \N GGCGAAWGGAGCUGAAUCCUACUGAWGGCCAAGGUGUGGUGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 117 18075498 EMSA \N GGGCACCCCCCCCGGCUCU \N \N \N \N \N \N \N \N \N \N \N \N 118 17726010 EMSA \N UGACGCUGGGAAAGACCAGAGAUCCUGCUGCUCAGCAUCAUUCCAGGCACAGAACGCCAGAAAAUGGAAUGGUGCUGUUCAACAGGUUCU \N \N \N \N \N \N \N \N \N \N \N \N 119 16508950 single RNA affinity purification HA-tag UCUCGGGGGGGUUUUCAUCUAUGAGGGUGUUUCCUCUAAACCUACGAGGGAGGAACACCUGAUCUUACAGAAAAUACCACCUCGAGA \N \N \N \N \N \N \N \N \N \N \N \N 120 16354698 genome-wide in vivo immunoprecipitation RIP-chip \N \N \N \N \N \N \N \N \N \N \N \N \N 121 10608902 protein affinity purification biotinylated RNA GGGAGUAAUGGUUGGAAUGGGCCAAAAAGA \N \N \N \N \N \N \N \N \N \N \N \N 129 7530842 EMSA \N GAAUUCACUGAGGCCGAGAGCAACAUGAACGACCUGGUGUCUGAGUACCAACAGUACCAGGAUGCCACGGCUGAGGAGGAGGGAGAGUUUAAGAGGAGGAAAAUGCCUAAAGCUCCUUAUCACUUGUAAAUUAUUCAUCCAUUUCUGCUCGUUUGUUCCAUUUAUUUGUCACCUGCAUUUCUCUUCUCUCCAGUUUCAAUGUUACCAGUUGUACAGAACGUUCCGUUCAUUAAAAGCAUUUUUCAUACUGAAAAAAAAAAAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 122 16093352 protein affinity purification biotinylated RNA GGGAGUAAUGGUUGGAAUGGGCCAAAAAGA \N \N \N \N \N \N \N \N \N \N \N \N 123 15798215 RNA footprinting \N AGUCAUCCAACAA \N \N \N \N \N \N \N \N \N \N \N \N 124 15798215 RNA footprinting \N UCCAGCAA \N \N \N \N \N \N \N \N \N \N \N \N 125 14752049 EMSA \N GGGCUUAUCCCGCCUGUCCCGCCAUUCUCGCUAGUUCGAUCGGUAGCGGGAGCGGAGAGCGGACCCCAGAGAGCCCUGAGCAGCCCCACCGCCGCCGCCGGCCUAGUUACCAUCACACCCCGGGAGGAGCCGCAGCUGCCGCAGCCGGCCCCAGUCACCAUCACCGCAACCAUGAGCAGCGAGGCCGAGACCCAGCAGCC \N \N \N \N \N \N \N \N \N \N \N \N 126 11447123 UV cross-linking \N GGGCGAAUUGGCUAGAGCACCAGUCACCGCUACGCGUCCACCAGUCACCGCCGCUAGC \N \N \N \N \N \N \N \N \N \N \N \N 127 10816422 EMSA \N GGCACGAUCGGACCGCCUUAC \N \N \N \N \N \N \N \N \N \N \N \N 128 10816422 EMSA \N ACGACUGAGCAGUCCACCCCAGGCGUGAUU \N \N \N \N \N \N \N \N \N \N \N \N 130 11376140 SELEX \N GCCANACCAYCGC 11376140_FRGY.txt \N \N \N \N 11376140_FRGY_aligned.txt 11376140_FRGY_motif.txt 1 130_11376140_2571_ybx2-a_CSDx1_logo.png 130_11376140.pwm 130_11376140.pfm \N 131 11376140 SELEX \N UGCACAGAAGG 11376140_nucleolin.txt \N \N \N \N 11376140_nucleolin_aligned.txt 11376140_nucleolin_motif.txt 1 131_11376140_2563_NCL_RRMx4_logo.png 131_11376140.pwm 131_11376140.pfm \N 132 14728692 EMSA \N AUAUUCAAACCUCUUAAUUUUUUUUUCUUAAACUG \N \N \N \N \N \N \N \N \N \N \N \N 133 14728692 EMSA \N GGGGAAAAAGAUAUUAACAUCACGUCUUUGUCUCUA \N \N \N \N \N \N \N \N \N \N \N \N 134 11564883 EMSA \N HMCAYCH \N \N \N \N \N \N \N \N \N \N \N \N 136 17567613 UV cross-linking \N CAGAAGGGGAGGGGUUCCA \N \N \N \N \N \N \N \N \N \N \N \N 137 17567613 UV cross-linking \N ACAAGGGGUGGGGGAAAA \N \N \N \N \N \N \N \N \N \N \N \N 138 19244236 protein affinity purification biotinylated RNA GAGCGCAACGGUAACAGGGGGCCAGAAGGGGAGGGGUUCCAGAGG \N \N \N \N \N \N \N \N \N \N \N \N 139 17337441 protein affinity purification biotinylated RNA DGGGD \N \N \N \N \N \N \N \N \N \N \N \N 140 11571276 protein affinity purification biotinylated RNA UAUGAUAGGGACUUAGGGUG \N \N \N \N \N \N \N \N \N \N \N \N 141 11571276 protein affinity purification biotinylated RNA UUAGAUCGAUGGGAAAAAAUUCGGUUAAGG \N \N \N \N \N \N \N \N \N \N \N \N 142 11571276 protein affinity purification biotinylated RNA UAAAUGUGGGGACCUAGAGGAGGAGCUGAAAAUUGUUA \N \N \N \N \N \N \N \N \N \N \N \N 143 11571276 protein affinity purification biotinylated RNA CUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCU \N \N \N \N \N \N \N \N \N \N \N \N 144 16516833 EMSA \N GCGUUUAUAUAACAUGAAAUAUAUAUACGC \N \N 1 \N \N \N \N \N \N \N \N \N 145 9163526 SELEX \N CGUGUGAG 9163526.txt \N \N \N \N 9163526_aligned.txt 9163526_motif.txt 1 145_9163526_2574_sap-49_RRMx2_logo.png 145_9163526.pwm 145_9163526.pfm \N 146 20186123 EMSA \N AUUAAUACGACUCACUAUAGGGUUCCUUACAGGGUUUUAGACAA \N \N \N \N \N \N \N \N \N \N \N \N 147 19457263 SELEX Bipartite motif, also see ExpID1216; PFM and PWM derived from logo reported in paper AWAA(N)(2-24)AWAA 19457263_slm-2.txt \N \N \N see image in PWM dir \N \N 0 \N 147_19457263.pwm 147_19457263.pfm \N 148 19457263 EMSA \N UUUGGGGGUUCAAUAAAAAUUUUCACUAUCCUAUUAACAGUUCCGCCGCUCC \N \N \N \N \N \N \N \N \N \N \N \N 149 16041388 SELEX Matrix derived from SELEX sequences, see also half-site matrix from same publication (expID 1215) NACUAAY(N)(2-20)UAAY 16041388_QK1.txt \N \N \N also see image in PWM dir 16041388_QK1_aligned.txt 16041388_QK1_motif.txt 1 149_16041388_1363_QKI_KHx1_logo.png 149_16041388.pwm 149_16041388.pfm \N 150 14718919 EMSA \N UAUUUAAUUUCUUAUCUACUCAUAUCUA \N \N \N \N \N \N \N \N \N \N \N \N 151 14718919 isothermal titration calorimetry \N AUCUACUCAUAU \N \N \N \N \N \N \N \N \N \N \N \N 152 15273320 fluorescence methods fluorescence-polarization assay AUCUACUCAUAU \N \N \N \N \N \N \N \N \N \N \N \N 153 15273320 EMSA \N CAGUGCCCAUUGGUACACACUAACCUCGG \N \N \N \N \N \N \N \N \N \N \N \N 154 15273320 fluorescence methods fluorescence-polarization assay AUCUAAUCAUAU \N \N \N \N \N \N \N \N \N \N \N \N 155 15273320 fluorescence methods fluorescence-polarization assay ACACACUAACCU \N \N \N \N \N \N \N \N \N \N \N \N 156 9341174 EMSA \N GGGUGACACACUAGCUAUAGCAUUAAAAGACCGAGCAAGU \N \N \N \N \N \N \N \N \N \N \N \N 157 9341174 SELEX \N (UAAA/UUUA) 9341174_SAM68_1.txt \N \N \N \N \N \N 0 \N \N \N \N 158 9341174 SELEX \N (UAAA/UUUA) 9341174_SAM68_2.txt \N \N \N \N \N \N 0 \N \N \N \N 159 9878068 EMSA \N GUGUUCAGAAAACUAGGCAGGAAAGUAGGAAAGUGAGAUCUGUUAAUCGCCCUAUAGUGAGUCGUAUUA \N \N \N \N \N \N \N \N \N \N \N \N 160 9878068 EMSA \N UGCAGCUCCCCCAAUUUUUCUGGAAGGAUAGAAACCCCUUAGGAAAUGCGAUCUGUGAUGGAUGAGAUUCCCUCGCCCUAUAGUGAGUCGUAUUA \N \N \N \N \N \N \N \N \N \N \N \N 161 18711726 genome-wide in vivo immunoprecipitation RIP-chip \N \N short list of genes in article \N \N mutant form of protein used \N \N \N \N \N \N Exp161.zip 162 18183298 EMSA \N AUAGACAGAAUCAGCACCAGUGCUCAUGGAGAAAAUUGGANCC \N \N \N \N \N \N \N \N \N \N \N \N 163 18183298 EMSA \N GAAGAAGAGGAUUAUUAAAGACUAUUUGAUUAGA \N \N \N \N \N \N \N \N \N \N \N \N 164 18936165 EMSA \N GGAGCUUCAUUCUUAAUCUCCAUUUUUUUCCAUUUUUC \N \N \N \N \N \N \N \N \N \N \N \N 165 17179751 genome-wide in vivo immunoprecipitation RIP-cloning; RNA is cloned and sequenced conventionally \N \N short list of genes in article \N \N \N \N \N \N \N \N \N Exp165.zip 166 12490714 genome-wide in vivo immunoprecipitation RNA pulldown with GST-tagged protein + differential display GGGCGAAUUGGGCCCGACGUCGCAUGCUCCCGGCCGCCAUGGCGGCCGCGGGAAUUCGAUUUAUUAGCCAGGAUCAUGGUGUAAUAAGACAUAACGUUUUUCCUUUAAAAAAAUUUAAGUGCGUGUGUAGAGUUAAGAAGCUGUUGUACAUUUAUGAUUUAAUAAAAUAAUUCUAAAG \N \N \N \N \N \N \N \N \N \N \N \N 167 12490714 genome-wide in vivo immunoprecipitation RNA pulldown with GST-tagged protein + differential display UGAUUGCACAUUGUUGUUUUUUUAAUAAGUCAUUCCAAAUAUGAU \N \N \N \N \N \N \N \N \N \N \N \N 168 12478298 EMSA \N AUAGACAGAAUCAGCACCAGUGCUCAUGGAGAAAAUUGGACC \N \N \N \N \N \N \N \N \N \N \N \N 169 11118435 EMSA \N AGUAUCAGGAUGAAGAGGAGACCCCACAUGCUACAAGCACAA \N \N \N \N \N \N \N \N \N \N \N \N 170 11118435 EMSA \N GAGGAGGAAAGAGGAGAGAGAAAGGAGGAA \N \N \N \N \N \N \N \N \N \N \N \N 171 10077576 homopolymer binding assay poly(C) (C)(n) \N \N \N \N \N \N \N \N \N \N \N \N 172 10077576 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 173 10077576 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 174 10077576 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 176 18230701 EMSA \N GGGAGAAUUUACGCUAACUCUAACAGUUUUCG \N \N \N \N \N \N \N \N \N \N \N \N 177 16198329 EMSA \N UCCAAAACUAGUGAGUGGAGGGGGGUGA \N \N \N \N \N \N \N \N \N \N \N \N 178 15201219 protein affinity purification biotinylated RNA CCAUUCUCUCACAUCAGAAUAUUCUAAUCAUCACUGCCCUUAACAUAUAUAUAUAUAUAUUUAUAACUUUCCGAUCAUUCCUUCUGCUUUGUAAACUAAUCCAAUCA \N \N \N \N \N \N \N \N \N \N \N \N 179 12736207 EMSA \N UCUAGACUAAUAUUGUAAGCUAUAAGUUGUAGAA \N \N \N \N \N \N \N \N \N \N \N \N 180 15568022 EMSA \N UCGGCCCGGUCAAUCAUGAAGAACUAACCC \N \N \N \N \N \N \N \N \N \N \N \N 181 10535969 EMSA \N UGUGUUCAGAAAACUAGGCAGGAAAGUAGGAAAAGAUCUGUUAAUCGCCCUAUAGUGAGUCGUAUUA \N \N \N \N \N \N \N \N \N \N \N \N 182 10535969 EMSA \N UGCAGCUCCCCCAAUUUUUCUGGAAGGAUAGAAACCCCUUAGGAAAUGCGAUCUGUGAUGGAUGAGAUUCCCUCGCCCUAUAGUGAGUCGUAUUA \N \N \N \N \N \N \N \N \N \N \N \N 183 12574161 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 184 12574161 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 185 14981510 NMR \N UUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 186 20335167 EMSA \N UUCAAAUUAGUAUGAUUCCUAUUUAAAGUGAUUUAUAUUUGAGUAAAAAGUUCAA \N \N \N \N \N \N \N \N \N \N \N \N 187 19416727 EMSA \N GUUAUUUUUAAGUUAUUUAUCUAUGUAUUUAUAAUAUAUUUAUGAUAAUUAUAUUAUUUAUG \N \N \N \N \N \N \N \N \N \N \N \N 188 19542371 EMSA \N AUUAUUUAUUAUUUAUUUAUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 189 19697322 EMSA \N GGUACUUAUUUAAUAGCCCUUUUUAAUUAGAAAUUAAAACAGUUAAUUUAAUUAA \N \N \N \N \N \N \N \N \N \N \N \N 190 19188452 EMSA \N UUAUUUAUGGACCACUUUUAUUUAUUAACAGACAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 191 19258311 EMSA \N CUAUUUAUUAAUAUUUAA \N \N \N \N \N \N \N \N \N \N \N \N 192 19258311 EMSA \N UAUUUAUUUAAAUAUUUAAAUUUUAUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 193 18367721 genome-wide in vivo immunoprecipitation RIP-chip AAUAA;HCYUBY;CUUGU;UUGUGS \N see supplementary info \N \N \N \N \N \N \N \N \N Exp193.zip 194 18256032 genome-wide in vivo immunoprecipitation RIP-chip UUAUUUAUU; AUUUA \N see supplementary info \N \N \N \N \N \N \N \N \N Exp194.zip 195 18042546 EMSA \N UUAUUUAUUAUUUAUUUAUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 196 18042546 EMSA \N UAUUGCUAAUUAUUUAUUUUUUCGAUUA \N \N \N \N \N \N \N \N \N \N \N \N 197 18042546 EMSA \N CUUAUUUAUUACCAUUAAUUAUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 198 15652485 yeast three-hybrid assay \N GACGUUCGGCUGGAGAAGUCAAGACUAUGAAAUAUAUCUCGUAAUUUAUGAUCGUAUAUUAUUUAUUUAUUGAUUGUUGUAUUGUUUAUUUAUUUAUUUAA \N \N \N \N \N \N \N \N \N \N \N \N 199 15652485 yeast three-hybrid assay \N UUCCGCCGGUAUAUUCCUUUGCCAUAUUUACUAGUAUUUAUUUAUUAUUAUUUAUUCUUCUAUUGUUCUGUUAUUUAUUUG \N \N \N \N \N \N \N \N \N \N \N \N 200 15814898 EMSA \N UUAUUUAUUUAUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 201 16061475 EMSA \N UUAUUUAUUUAUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 202 16061475 EMSA \N UUAUUUAUUUCUUCUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 203 16061475 EMSA \N UUAUUUAUUUAUUAUUUCUUUCUU \N \N \N \N \N \N \N \N \N \N \N \N 204 16061475 EMSA \N UUAUUUAUUUAUUCUUUCUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 205 16061475 EMSA \N UUAUUUAUUUCUUCUUUCUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 206 16061475 EMSA \N UUAUUUCUUUAUUAUUUCUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 207 16061475 EMSA \N UUAUUUCUUUCUUAUUUCUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 208 16935542 EMSA \N CUACCAUAAUGAUACAGAAAGGCAAUUUUAGGAACCAAAGAAAGACUGUUAAGUGUUUCAAU \N \N \N \N \N \N \N \N \N \N \N \N 209 17030620 EMSA \N UAUUUAUGUAUUUAUGUAUAUCCUCCUAGGUGAAGGAGGGGUGUAUGUAAUAUUUAUUCUAACUUAUGCAGGGGUGCGAGAUAUGCCUCCCUGCUGUAACACAGAUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 210 17133347 EMSA \N AUUUAUUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 211 17133347 EMSA \N UAUUUAUAUUUUUAUUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 212 17133347 EMSA \N AUUUAUUAUUUAUUUAUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 213 17133347 EMSA \N UAUUUAUUUAAAUAUUUAAAUUUUAUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 214 17133347 EMSA \N UAUUUAUUUAUGUAUUUAUGUAUUUAUUUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 215 15187092 EMSA \N CCCUUUAUUUAUGACGACUUUAUUUAUUGUAUUAAGAUUUUAUAGUAUUUAUAUAUAUGGGUCGUCUACUCCGUUUUUCUUUUUUGUAAUGUUAAAACUGAUACUGUAUAAGUAUAUGCUAUAAUAUAUAAUAUAUUGCUACCGUACAAGUCUAUUUUUUGGGGGGGGUUGGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 216 15634918 EMSA \N UAUUUAUUUAAAUAUUUAAAUUUUAUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 217 15634918 EMSA \N AUUUAUUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 218 15467755 UV cross-linking \N GGUACUUAUUUAAUAGCCCUUUUUAAUUAGAAAUUAAAACAGUUAAUUUAAUUAAAGAGUAGGGUUUUUUCAGUA \N \N \N \N \N \N \N \N \N \N \N \N 219 15504035 EMSA \N CUCUAUUUAUAUUUGCACUUAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUGCUUAUGAAUGUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 220 11782475 EMSA \N AUUUAUUUAUAUAUUUAUAUUUUUUAAAUAUUUAUUUAUUUAUUUAUUUAUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 221 12324455 SELEX \N UUAUUUAWW 12324455_TTP.txt \N \N \N \N 12324455_TTP_aligned.txt 12324455_TTP_motif_2.txt 2 221_12324455_1405_ZFP36_Znf_CCCHx2_logo.png 221_12324455.pwm 221_12324455.pfm \N 222 10330172 UV cross-linking \N GAAUUCACUGGAGCCUCGAAUGUCCAUUCCUGAGUUCUGCAAAGGGAGAGUGGUCAGGUUGCCUCUGUCUCAGAAUGAGGCUGGAUAAGAUCUCAGGCCUUCCUACCUUCAGACCUUUCCAGACUCUUCCCUGAGGUGCAAUGCACAGCCUUCCUCACAGAGCCAGCCCCCCUCUAUUUAUAUUUGCACUUAUUAUUUAUUAUUUAUUUAUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 223 10330172 UV cross-linking \N CUCUAUUUAUAUUUGCACUUAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUGCUUAUGAAUGUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 224 19602482 EMSA \N GUUGGAGAAACGUACGGUAAGGAUAUAACCUCCCGGGGGAAAGACAAGCCGAUUGCC \N \N \N \N \N \N \N \N \N \N \N \N 225 19602482 EMSA \N GUUGGACAAAUGUACGGUAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC \N \N \N \N \N \N \N \N \N \N \N \N 226 19602482 EMSA \N GUUGGAGAAACGUACGGCAAGGAUAUAACCUCCCGGGGGAAAGACAAGCCGAUUGCC \N \N \N \N \N \N \N \N \N \N \N \N 227 18477479 UV cross-linking \N GAGAAAUGCUUUUUAUUUUGGAGUGGUAGUAAAAAGGGCUCGCAGGAUAAGGAGGCCAUGCAGGCCUACUCUGAGUCUCUGAUGUCACCAGCUGCCAAGGGCACGGUACUGCAAGAAGCCAAGCUGUAG \N \N \N \N \N \N \N \N \N \N \N \N 228 18841201 genome-wide in vivo immunoprecipitation CLIP-cloning; cross-linked mRNAs were cloned and sequenced conventionally \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 229 19116412 genome-wide in vivo immunoprecipitation CLIP-seq GAAGAA \N data not released \N \N \N \N \N \N \N \N \N \N 230 17576688 UV cross-linking \N GUAGUUCUUUUGUUCUUCACUAUUAAGAACUUAAUUUGGUGUCCAUGUCUCUUUUUUUUUCUAGUUUGUAGUGCUGGAAGGUAUUUUUGGAGAAAUUCUUACAUGAGCAUUAGGAGAAUGUAUGGGUGUAGUGUCUUGUAUAAUAGAAAUUGUUCCACUGAUAAUUUACUCUAGUUUUUUAUUUCCUCAUAUUAUUUUCAGUGGCUUUUUCUUCCACAUCUUUAUAUUUUGCACCACAUUCAACACUGUAUCUUGCACAUGGCGAGCA \N \N \N \N \N \N \N \N \N \N \N \N 231 17668007 NMR \N CACACGA \N \N \N \N \N \N \N \N \N \N \N \N 232 16385450 protein affinity purification biotinylated RNA GGUUUCAGACAAAAUCA \N \N \N \N \N \N \N \N \N \N \N \N 233 16611940 UV cross-linking \N UAUGGAGGAUUCACUGUACAGAAUGAAGCCAACAAA \N \N \N \N \N \N \N \N \N \N \N \N 234 16825284 SELEX Note: selection criteria were based on splicing activity, not binding CSSNSSR 16825284_SF2_1.txt \N \N 1 functional 16825284_SF2_1_aligned.txt 16825284_SF2_1_motif.txt 1 234_16825284_1448_SFRS1_RRMx2_logo.png 234_16825284.pwm 234_16825284.pfm \N 235 16825284 SELEX Note: selection criteria were based on splicing activity, not binding CSMMSSA 16825284_SF2_2.txt \N \N 1 functional 16825284_SF2_2_aligned.txt 16825284_SF2_2_motif.txt 1 235_16825284_1448_SFRS1_RRMx2_logo.png 235_16825284.pwm 235_16825284.pfm \N 236 15302913 EMSA \N GGAAUCAACACGAGUG \N \N \N \N \N \N \N \N \N \N \N \N 237 11421362 UV cross-linking \N GGCGGCCAGAGGGUGUGCGGAGCUGGUGGGGAGGAGCUUGGAGAGAAGGGACAAAGCUGGGGGCUGAGGGAGAACCCCCA \N \N \N \N \N \N \N \N \N \N \N \N 238 11575921 EMSA \N UAGUUUUUGCUGUACUUUCUGUAGUGAAUAGAGUUAGGCAGGGAUAUUCACCAUUAUCGUUUCAGACCCACCUCCCAAUCCCGAGGGGACCCGACAGGCCCGAAGGAAUAGAAGAAGAAGGUGGAGAGAGAGACAGAGACAGAUCCAUUCGAUUAGUGAACGGAUCCUUGGCA \N \N \N \N \N \N \N \N \N \N \N \N 239 11925564 UV cross-linking \N AUUUUCCUUACAGGGUUUCAGACAAAAUCAAAAAGAAGGAAG \N \N \N \N \N \N \N \N \N \N \N \N 240 9826658 UV cross-linking \N GGCCUGUCUCUUCUUUGCUCGGCUCCCCCGCCUGCGGUCCCAUCAGAGCAGG \N \N \N \N \N \N \N \N \N \N \N \N 241 10022858 ??? not really sure how to work this in \N \N \N \N 1 functional \N \N \N \N \N \N \N 242 7543047 SELEX SF2dRS RGAAGAAC 7543047_SF2dRS.txt \N \N \N \N 7543047_SF2dRS_aligned_1.txt 7543047_SF2dRS_motif_1.txt 2 242_7543047_1448_SFRS1_RRMx2_logo.png 242_7543047.pwm 242_7543047.pfm \N 953 7543047 SELEX SC35dRS AGSAGAGUA 7543047_SC35.txt \N \N \N \N 7543047_SC35_aligned.txt 7543047_SC35_motif_1.txt 2 953_7543047_1537_SFRS2_RRMx1_logo.png 953_7543047.pwm 953_7543047.pfm \N 243 7543047 SELEX SF2 RRM 1 ACGCGCA 7543047_SF2_RBD1.txt \N \N \N \N 7543047_SF2_RBD1_aligned.txt 7543047_SF2_RBD1_motif.txt 1 243_7543047_1448_SFRS1_RRMx2_logo.png 243_7543047.pwm 243_7543047.pfm \N 244 7543047 SELEX SC35dRS GUUCGAGUA 7543047_SC35.txt \N \N \N \N 7543047_SC35_aligned.txt 7543047_SC35_motif_2.txt 2 244_7543047_1537_SFRS2_RRMx1_logo.png 244_7543047.pwm 244_7543047.pfm \N 245 12524544 genome-wide in vivo immunoprecipitation RIP-chip; Mex67 \N \N GSE98; GSE99; GSE100; GSE101; GSE102; GSE103; GSE104 \N \N \N \N \N \N \N \N \N Exp245.zip 246 20412057 EMSA \N GGGCGAAUUGGAGCUCCACCGCGGUGGCGGCCGCUCUAGAACUAGUGGAUCCUUAUCUUAAGCAUGUGUAAUGCUGGAUGUGUACAGUACAGUACUGAAAAGCU \N \N \N \N \N \N \N \N \N \N \N \N 247 18799579 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 248 17630287 EMSA poly(A) \N \N \N \N \N \N \N \N \N \N \N \N \N 249 19840948 genome-wide in vivo immunoprecipitation TAP-seq \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 250 11927564 filter binding assay poly(A), 10.5nM \N \N \N \N \N \N \N \N \N \N \N \N \N 251 15703440 genome-wide in vivo immunoprecipitation RIP-chip; nab2 AAAAAG \N http://biochemistry.ucsf.edu/labs/guthrie/kimguisbert2005.htm \N \N \N \N \N \N \N \N \N Exp251.zip 252 15703440 genome-wide in vivo immunoprecipitation RIP-chip; npl3 UAUAUAA; ACAUACA \N http://biochemistry.ucsf.edu/labs/guthrie/kimguisbert2005.htm \N \N \N \N \N \N \N \N \N Exp252.zip 253 15703440 genome-wide in vivo immunoprecipitation RIP-chip; hrp1 \N http://biochemistry.ucsf.edu/labs/guthrie/kimguisbert2005.htm \N \N \N \N \N \N \N \N \N Exp253.zip 254 1714588 SELEX \N UCAGUAGUCU 9121479_su(s).txt \N \N \N \N 9121479_su(s)_aligned.txt 9121479_su(s)_motif.txt 1 254_1714588_2197_sus_Znf_CCCHx1_logo.png 254_1714588.pwm 254_1714588.pfm \N 255 10675610 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 256 10675610 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 257 17947529 EMSA \N GUAACUUAGAAGUUUUUCACAAAGACCAAUAGCCGGUAAUCAGCCAGAUUACUGAAGGUCAAGCACUUCUGUUUC \N \N \N \N \N \N \N \N \N \N \N \N 258 17947529 EMSA \N ACGGCCCCUGAAUGUGGCUAACCUUAACCCUGCAGCUAGAGCACGUAACCCAAUGUGUAUCUAGUCGUAAUGAGCAAUUGCGGGAUGGGACCAACGACUUUGGGUGUCCGUGUUUCACUUUUUCCUUUAUAUUUGCUUAUGGUGACAAUAUAUACACUAUAUAUAUUGGCACCAUG \N \N \N \N \N \N \N \N \N \N \N \N 259 18203923 EMSA \N UUUUUUUGAGCAUGAAUUUUUUUGAGCACGUGAACCUAGGAUUAAG \N \N \N \N \N \N \N \N \N \N \N \N 260 10101203 SELEX \N (R)(5)AAGUAAR; (R)(8)AACRRR 10101203_unr.txt \N \N \N \N \N \N \N \N \N \N \N 261 12820967 yeast three-hybrid assay \N GAUCCGCAGAGGCUCUGGCAGCUUCUGCAGAUC \N \N 1 \N \N \N \N \N \N \N \N \N 262 12820967 EMSA \N GAUCCGCAGAGGCUCUGGCAGCUUCUGCAGAUC \N \N 1 \N \N \N \N \N \N \N \N \N 263 12858164 fluorescence methods fluorescence-polarization assay AGGCUCUGGCAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 264 12858164 fluorescence methods fluorescence-polarization assay AGGCUCAGGCAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 265 12858164 fluorescence methods fluorescence-polarization assay AGGCUCGGGCAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 266 12858164 fluorescence methods fluorescence-polarization assay AGGCUCCGGCAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 267 12858164 fluorescence methods fluorescence-polarization assay AGGCUCUGGAAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 268 12858164 fluorescence methods fluorescence-polarization assay AGGCUCUGGUAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 269 12858164 fluorescence methods fluorescence-polarization assay AGGCUCUGGGAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 270 12858164 fluorescence methods fluorescence-polarization assay AGGCUCUGGAGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 271 12858164 fluorescence methods fluorescence-polarization assay AGGCACUGGCUGUCU \N \N 1 \N \N \N \N \N \N \N \N \N 272 12858164 fluorescence methods fluorescence-polarization assay AGGGUCUGGCACUCU \N \N 1 \N \N \N \N \N \N \N \N \N 273 16375924 NMR \N GGAGGCUCUGGCAGCUUUC \N \N \N \N \N \N \N \N \N \N \N \N 274 16429151 fluorescence methods fluorescence-polarization assay AGGCUCUGGCAGUCU \N \N \N \N \N \N \N \N \N \N \N \N 275 16429151 fluorescence methods fluorescence-polarization assay AGGCUUUGACAGUCU \N \N \N \N \N \N \N \N \N \N \N \N 276 16429151 fluorescence methods fluorescence-polarization assay AGGCUGUGCCAGUCU \N \N \N \N \N \N \N \N \N \N \N \N 277 16429151 fluorescence methods fluorescence-polarization assay AGGCUCUGGAGUCU \N \N \N \N \N \N \N \N \N \N \N \N 278 20371350 genome-wide in vivo immunoprecipitation PAR-clip UGUANAUA \N see supplementary info \N \N \N \N \N \N \N \N \N \N 279 20371350 genome-wide in vivo immunoprecipitation PAR-clip ACUAAC \N see supplementary info \N \N \N \N \N \N \N \N \N \N 280 19540345 fluorescence methods fluorescence-polarization assay; Kds in article AAUUGUACAUAA \N \N \N \N \N \N \N \N \N \N \N \N 281 19540345 fluorescence methods fluorescence-polarization assay; Kds in article ACAUUAUUUUGUUGUCGAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 282 19540345 fluorescence methods fluorescence-polarization assay; Kds in article CUUGUAGAUAA \N \N \N \N \N \N \N \N \N \N \N \N 283 19901328 EMSA Kd=33.2nM UGUGCCAUA \N \N \N \N \N \N \N \N \N \N \N \N 284 19901328 EMSA Kd=39.4nM UGUACCAUA \N \N \N \N \N \N \N \N \N \N \N \N 285 19901328 EMSA Kd=45.8nM UGUACUAUA \N \N \N \N \N \N \N \N \N \N \N \N 286 19901328 EMSA Kd=52.9nM UGUGUCAUU \N \N \N \N \N \N \N \N \N \N \N \N 287 19901328 EMSA Kd=56.7nM UGUGUCAUA \N \N \N \N \N \N \N \N \N \N \N \N 288 19901328 EMSA Kd=81.3nM UGUGUCAUC \N \N \N \N \N \N \N \N \N \N \N \N 289 19901328 EMSA Kd=73.6nM UGUACAAUA \N \N \N \N \N \N \N \N \N \N \N \N 290 19901328 EMSA Kd=81.7nM UGUAAUAUA \N \N \N \N \N \N \N \N \N \N \N \N 291 19901328 EMSA Kd=96.9nM UGUAAAAUC \N \N \N \N \N \N \N \N \N \N \N \N 292 19901328 EMSA Kd=127nM UGUGUUAUC \N \N \N \N \N \N \N \N \N \N \N \N 293 19369425 yeast three-hybrid screen \N \N 19369425_Ce_puf-11.txt \N \N \N \N \N \N \N \N \N \N \N 294 19372537 fluorescence methods fluorescence-polarization assay UCAUAUAAUCGUUGUCCAGAAUUGUAUAUAUUCG \N \N \N \N \N \N \N \N \N \N \N \N 295 19372537 fluorescence methods fluorescence-polarization assay ACAUUAUUUUGUUGCGAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 296 19372537 fluorescence methods fluorescence-polarization assay UCAUAUAAUCUAGGGCCAGAAUUGUAUAUAUUCG \N \N \N \N \N \N \N \N \N \N \N \N 297 19372537 fluorescence methods fluorescence-polarization assay UCAUAUAAUCGUUGUCCAGAACGGGAUAUAUUCG \N \N \N \N \N \N \N \N \N \N \N \N 298 18327269 EMSA \N UGUAUAUUA \N \N \N \N \N \N \N \N \N \N \N \N 299 18327269 EMSA \N UGUAUACUA \N \N \N \N \N \N \N \N \N \N \N \N 300 18327269 EMSA \N UGUAUAAUA \N \N \N \N \N \N \N \N \N \N \N \N 301 18327269 EMSA \N UGUAUAGUA \N \N \N \N \N \N \N \N \N \N \N \N 302 18327269 EMSA \N UGUAUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 303 18327269 EMSA \N UGUAUAUA \N \N \N \N \N \N \N \N \N \N \N \N 304 18463699 EMSA \N AUUAUUUUGUUGUCGAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 305 18579869 yeast three-hybrid screen \N CYCUGUAYYYUGU 18579869_puf-5.txt \N \N \N \N \N \N \N \N \N \N \N 306 18579869 EMSA 5BE UAGCCUCUGUAUCUUGUAAUUUAAUAAA \N \N \N \N \N \N \N \N \N \N \N \N 309 18776931 genome-wide in vivo immunoprecipitation RIP-chip; PUM1 UGUAHAUA \N see supplementary info \N \N \N \N \N \N \N \N \N Exp309.zip 310 19146813 EMSA \N UGUGUAUAUA \N \N \N \N \N \N \N \N \N \N \N \N 312 19364820 EMSA \N CCCAGUGCAUUCUGUAUAUAUGUAAAUUUUAUUAACUUA \N \N \N \N \N \N \N \N \N \N \N \N 313 18094119 UV cross-linking \N UAAGAAAAAAAUGUAAUGAAAUAUAAAUGUGUUUUUCCCUCCCUU \N \N \N \N \N \N \N \N \N \N \N \N 314 18094119 UV cross-linking \N UAAGAAAAAAAUGUAAUGAAAUAUAAAUGUGUUUUUCCCUCCCUUAAUAUUAUUAUUCUUAUGAGUGAUGCCCUUAUGUUUUUUUUGCGGUCUAGUAUAUGUAAAUAUAGACACACACAUAUAUAUAUAUUUAUGUGUAUAAAUCCUAGCUAAAUAAACAUUUUUAGAUUGUUAUUAGUAUAAUUUUUUCC \N \N \N \N \N \N \N \N \N \N \N \N 315 18166083 EMSA \N AGUUUCUUUUUCGAUGUAUCAUAAUCCA \N \N \N \N \N \N \N \N \N \N \N \N 316 18166083 EMSA \N UAUUUUACGUAUUUUGUAAUAUAUUCAU \N \N \N \N \N \N \N \N \N \N \N \N 317 17389596 EMSA yeast puf4 UAAAAUGUGUAUAUUAGUUUAAAAAGUA \N \N \N \N \N \N \N \N \N \N \N \N 318 17389596 EMSA AGUUUAAAAAGUUGUAUGUAAUAAAAGU \N \N \N \N \N \N \N \N \N \N \N \N 319 17389596 EMSA UAAAAUGUGUAUAUUAGUUUAAAAGU \N \N \N \N \N \N \N \N \N \N \N \N 320 15607425 yeast three-hybrid screen GNNNNNNNNNNNUGUA \N \N \N \N \N \N \N \N \N \N \N \N 321 16244132 EMSA \N GACAACCAUUUCUUGUAUAUAUAAGAAUAG \N \N \N \N \N \N \N \N \N \N \N \N 322 16418484 EMSA \N GUGUUUUGAGUCUGUAUAAACCGUUGCUUUGCCUUGUAAAUAA \N \N \N \N \N \N \N \N \N \N \N \N 323 16537387 genome-wide in vivo immunoprecipitation RIP-chip HHUGUAHAUAHDHWDD \N GSE3580; GSE3581; GSE3582 \N \N \N \N 16537387_Pum_motif.txt 1 323_16537387_2193_pum_PUMx1_logo.png 323_16537387.pwm 323_16537387.pfm Exp323.zip 324 16715093 EMSA yeast puf5 AGUUUAAAAAGUUGUAUGUAAUAAAAGUA \N \N \N \N \N \N \N \N \N \N \N \N 325 15024427 genome-wide in vivo immunoprecipitation TAP-chip CHUGUAAAUA; UHUGUAHAHUA; WUGUAWYWWUA \N see supplementary info \N \N \N \N \N \N \N \N \N \N 328 11101532 UV cross-linking yeast puf3 UCUUACUGACAGUCUGCCGACAACCAUUUCUUUGUAUAUAUAAGAAUAGGUAUUCACAAACUAUAGUAUAUACUACC \N \N \N \N \N \N \N \N \N \N \N \N 329 11780640 SELEX \N UGUA 11780640_Pum2_1.txt \N \N \N \N 11780640_Pum2_1_aligned.txt 11780640_Pum2_1_motif.txt 1 329_11780640_1800_Pum2_PUMx1_logo.png 329_11780640.pwm 329_11780640.pfm \N 330 11780640 SELEX \N UGUANAUARNNNNBBBBSCCS 11780640_Pum2_2.txt \N \N \N \N 11780640_Pum2_2_aligned.txt 11780640_Pum2_2_motif.txt 1 330_11780640_1800_Pum2_PUMx1_logo.png 330_11780640.pwm 330_11780640.pfm \N 331 12050669 EMSA \N UUACCAUAGAAUCAUGUGCCAUACAUCA \N \N \N \N \N \N \N \N \N \N \N \N 332 12050669 EMSA \N CACCCCCUUUUAUUAUUCUGUGUUAUCUUA \N \N \N \N \N \N \N \N \N \N \N \N 333 12202039 EMSA \N UCAUAUAAUCGUUGUCCAGAUUGUAUAUAUUCG \N \N \N \N \N \N \N \N \N \N \N \N 334 9660969 EMSA \N AUUAUUUUGUUGUCUAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 335 9660969 EMSA \N AUUAUUUUGCCGUCUAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 336 9404893 EMSA \N GUUGUCCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 337 9404893 EMSA \N CCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 338 9404893 EMSA \N GUUGUCCAGAAUUGUC \N \N \N \N \N \N \N \N \N \N \N \N 339 9404893 EMSA \N UUUUUCCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 340 9404893 EMSA \N UUUGUCCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 341 9404893 EMSA \N GGUGUCCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 342 9404893 EMSA \N GUGGUCCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 343 9404893 EMSA \N GUUUUCCAGAAUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 344 9404893 EMSA \N GUUGUCCAGACUUGUA \N \N \N \N \N \N \N \N \N \N \N \N 345 9404893 EMSA \N GUUGUCCAGAAGUGUA \N \N \N \N \N \N \N \N \N \N \N \N 346 7889568 UV cross-linking \N AUUAUUUUGUUGUCGAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 347 7889568 UV cross-linking \N AUUAUUUUGCCGUCGAAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 348 7889568 UV cross-linking \N AUUAUUUUGUUGUCCCAAAUUGUACAUAAGCC \N \N \N \N \N \N \N \N \N \N \N \N 349 15769874 yeast three-hybrid screen \N UAVDHHYDUGUAHHAUWHNNNN \N \N \N \N \N \N \N \N \N \N \N \N 350 8846295 SELEX eIF4B alone SUYGGAM 8846295_eIF4b_alone.txt \N 1 \N \N 8846295_eIF4b_alone_aligned.txt 8846295_eIF4b_alone_motif.txt 1 350_8846295_1251_EIF4B_RRMx1_logo.png 350_8846295.pwm 350_8846295.pfm \N 351 8846295 SELEX eIF4B in the presence of eIF4A SUYGGAM 8846295_eIF4b_with_eIF4a.txt \N 1 \N \N 8846295_eIF4b_with_eIF4a_aligned.txt 8846295_eIF4b_with_eIF4a_motif.txt 1 351_8846295_1251_EIF4B_RRMx1_logo.png 351_8846295.pwm 351_8846295.pfm \N 352 8846295 SELEX RRM of eIF4B SUYGGAM 8846295_eIF4b_RRM.txt \N 1 \N \N 8846295_eIF4b_RRM_aligned.txt 8846295_eIF4b_RRM_motif.txt 1 352_8846295_1251_EIF4B_RRMx1_logo.png 352_8846295.pwm 352_8846295.pfm \N 353 16803875 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 354 11565745 UV cross-linking \N UAGGUGACCGGAGGUCGGCACCUUUC \N \N \N \N \N \N \N \N \N \N \N \N 355 20371350 genome-wide in vivo immunoprecipitation PAR-clip CAU \N see supplementary info \N \N \N \N \N \N \N \N \N \N 356 20371350 genome-wide in vivo immunoprecipitation PAR-clip CAU \N see supplementary info \N \N \N \N \N \N \N \N \N \N 357 20371350 genome-wide in vivo immunoprecipitation PAR-clip CAUU \N see supplementary info \N \N \N \N \N \N \N \N \N \N 358 9121465 EMSA \N CCGGACUGUUACCAACACCCACACCC \N \N \N \N \N \N \N \N \N \N \N \N 359 12507992 SELEX KH 3+4, some sequences not reported AAGCACCCGUU 12507992_ZBP1.txt \N \N \N \N 12507992_ZBP1_aligned.txt 12507992_ZBP1_motif.txt 1 359_12507992_1530_IGF2BP1_RRMx2.KHx4_logo.png 359_12507992.pwm 359_12507992.pfm \N 360 9560341 UV cross-linking \N UUCACUUUCACUUUCACUUUCA \N \N \N \N \N \N \N \N \N \N \N \N 361 20080952 EMSA \N ACCGGACUGUUACCAACACCCACACCCC \N \N \N \N \N \N \N \N \N \N \N \N 362 20080952 EMSA \N ACCGGACUUUUACAAUCACACACCGCGC \N \N \N \N \N \N \N \N \N \N \N \N 364 17264115 EMSA \N ACCAGAUCCCGGAGUUGGAAAACAAUGAAAAGGCCCCCAAGGUAGUUAUCCUUAAAAAAGCCACAGCAUACAUCCUGUCCGUCCAAGCAGAGGAGCAAAAGCUCAUUUCUGAAGAGGACUUGUUGCGGAAACGACGAGAACAGUUGAAAACACAAACUUGAACAGCACGGAACUCUUGUGGC \N \N \N \N \N \N \N \N \N \N \N \N 365 19706616 protein affinity purification biotinylated RNA GUUCUAUCCUUUUCUAUCCUUUUCUAUCCUUUUCUAUCCUU \N \N \N \N \N \N \N \N \N \N \N \N 366 19706616 protein affinity purification biotinylated RNA GGAACAUUUCUAUCCUUAAGUUAUCCUCUAUUGCACGUUC \N \N \N \N \N \N \N \N \N \N \N \N 367 19706616 protein affinity purification biotinylated RNA GUUAUAUCCUUUUAUAUCCUUUUAUAUCCUUUUAUAUCCUU \N \N \N \N \N \N \N \N \N \N \N \N 368 19706616 protein affinity purification biotinylated RNA GUUCUGUCCUUUUCUGUCCUUUUCUGUCCUUUUCUGUCCUU \N \N \N \N \N \N \N \N \N \N \N \N 369 19706616 protein affinity purification biotinylated RNA GUUCUAUACUUUUCUAUACUUUUCUAUACUUUUCUAUACUU \N \N \N \N \N \N \N \N \N \N \N \N 370 10734137 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 371 10734137 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 372 11773003 EMSA \N GGCUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 373 17403780 UV cross-linking \N AACAUGGGAGGCAGGGCCAGGGGGAUUAGAAUCUCUGAGCCAUCAC \N \N \N \N \N \N \N \N \N \N \N \N 374 12603330 EMSA \N GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUA \N \N \N \N \N \N \N \N \N \N \N \N 375 9199325 SELEX CTSF (GU)(n) 9199325_CTSF.txt \N \N \N \N \N \N 0 \N \N \N \N 376 9199325 SELEX yeast Rna15, 7 rounds UGYGUAUUYUCC 9199325_Rna15_7rounds.txt \N \N \N \N 9199325_Rna15_7rounds_aligned.txt 9199325_Rna15_7rounds_motif.txt 1 376_9199325_2602_Rna15_RRMx1_logo.png 376_9199325.pwm 376_9199325.pfm \N 377 9199325 SELEX yeast Rna15, 9 rounds UGYGUAUUYUCC 9199325_Rna15_9rounds.txt \N \N \N \N 9199325_Rna15_9rounds_aligned.txt 9199325_Rna15_9rounds_motif.txt 1 377_9199325_2602_Rna15_RRMx1_logo.png 377_9199325.pwm 377_9199325.pfm \N 378 17029590 UV cross-linking \N UUUUUUUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 379 17029590 UV cross-linking \N GUUGUUGUUGUUGUUGUUGUUGUUGUU \N \N \N \N \N \N \N \N \N \N \N \N 380 20097654 NMR yeast Rna15 UGUUGU \N \N \N \N \N \N \N \N \N \N \N \N 381 20097654 NMR yeast Rna15 UUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 382 20097654 NMR yeast Rna15 UGUUUG \N \N \N \N \N \N \N \N \N \N \N \N 383 12773396 NMR \N UGUGUGUU \N \N \N \N \N \N \N \N \N \N \N \N 384 12773396 NMR \N GUGUGUGUUG \N \N \N \N \N \N \N \N \N \N \N \N 385 12773396 NMR \N GUGUGUGUUUG \N \N \N \N \N \N \N \N \N \N \N \N 386 12773396 NMR \N GUGUGUGUUUUG \N \N \N \N \N \N \N \N \N \N \N \N 387 12773396 NMR \N GUUGUGUGUGUUG \N \N \N \N \N \N \N \N \N \N \N \N 388 20371350 genome-wide in vivo immunoprecipitation PAR-clip \N see supplementary info \N \N \N \N \N \N \N \N \N \N 389 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 390 18042455 genome-wide in vivo immunoprecipitation RIP-seq; c elegans ain-1 \N \N \N \N \N \N \N \N \N \N \N \N \N 391 17451601 protein affinity purification biotinylated RNA GUGGAGAGAGAGACAGAGACAGAUCCAUUCGA \N \N \N \N \N \N \N \N \N \N \N \N 392 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUCCCUUCCCGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 393 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUAAAUUCCCGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 394 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUCCCUUAAAGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 395 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUCCAUUAAAGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 396 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUACCUUAAAGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 397 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUAAACCAAAGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 398 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUAAAUUCCAGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 399 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUAAAUUACCGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 400 17609276 protein affinity purification biotinylated RNA UUAAAACAGCUCUCCCCUUCUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUAAAUUCACGUAACUUAGACGCACAAAACCAAGUUCAAUAGAAGGGGGUAC \N \N \N \N \N \N \N \N \N \N \N \N 401 17928403 protein affinity purification biotinylated RNA AGCCACCUCCCACCCCACCCCA \N \N \N \N \N \N \N \N \N \N \N \N 402 17928403 protein affinity purification biotinylated RNA CCAGCCCUGUCCCCUGAAAAACUGA \N \N \N \N \N \N \N \N \N \N \N \N 403 17928403 protein affinity purification biotinylated RNA CCCAGAAAUGUCCCCUGAAAAACUGA \N \N \N \N \N \N \N \N \N \N \N \N 404 18929541 EMSA PCBP2 KH3 GGCUCAGCACUACCCCAGUGUAGUC \N \N \N \N \N \N \N \N \N \N \N \N 405 18929541 EMSA PCBP2 KH1 GGCACCGCAUUCCCCACGGGCGACCGUGGCGGUGUC \N \N \N \N \N \N \N \N \N \N \N \N 406 20211135 EMSA \N CUGGCCCUCUCUGCCCUUCCGU \N \N \N \N \N \N \N \N \N \N \N \N 407 20211135 EMSA \N CUGGCCAUGCCGGGAGAACUCUAACUCCCCCAUGGAG \N \N \N \N \N \N \N \N \N \N \N \N 408 11278705 SELEX secondary structure seems to depend on constant bases... WW(C)(3-5)(W)(2-6)(C)(3-5)(W)(2-6)(C)(3-5)WW 11278705_PCBP1.txt \N 1 \N \N \N \N 0 \N \N \N \N 409 11278705 SELEX secondary structure seems to depend on constant bases... U(C)(3-4)WW 11278705_HNRNPK.txt \N 1 \N \N \N \N 0 \N \N \N \N 410 12972621 genome-wide in vivo immunoprecipitation RIP-chip; nonstandard protocol with biotinylated DNA \N \N See Table 2 in article \N \N \N \N \N \N \N \N \N Exp410.zip 411 15331611 NMR \N UCCCCA \N \N \N \N \N \N \N \N \N \N \N \N 412 15331611 NMR \N CUAACCCUAA \N \N \N \N \N \N \N \N \N \N \N \N 413 15331611 NMR \N GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC \N \N \N \N \N \N \N \N \N \N \N \N 414 15331611 NMR \N GGGGUUGUACCCACCCCAC \N \N \N \N \N \N \N \N \N \N \N \N 415 12600897 EMSA GGCCCUCUGCCACCCAGGCAGGCCCUGCCUUCAGCCCUGGCCCAGAGCUGGAACACUCUCUGAGAUGCCCCUCUGCCUGGGCUUAUGCCCUCAGAUGGAGACAUUGGAUGUGGAGCUCCUGCUGGAUGCGUGCCCUGACCCCUGCACCAGCCCUUCCCUGCUUUGAGGACAAAGAGAAUAAAGACUUCAUGUUCAC \N \N \N \N \N \N \N \N \N \N \N \N 416 12933794 EMSA \N GCUGGAACACUCUCUGAGAUGCCCCUCUGCCUGGGCUUAUGCCCUCAGAUGGAGACAUUCCAUGUGGAGCUCCUGCUGGAUGCGUGCCCUGACCCCUGCACCAGCCCUUCCCUGCUUUGAGGACAAAGAGAAUAAAGACUUCAUGUUCAC \N \N \N \N \N \N \N \N \N \N \N \N 417 10608888 EMSA \N UUAAAACAGCUCUGGGGUUGUACCCACCCCAGAGGCCCACGUGGCGGCUAGUACUCCGGUAUUGCGGUACCCUUGUACGCCUGUUUUAUACUCCCUUCCCGUAACUUA \N \N \N \N \N \N \N \N \N \N \N \N 418 10606523 EMSA \N GGCCUCGCCAGACUAUCUCUCACCUAUCUCCCUGUCAAAGU \N \N \N \N \N \N \N \N \N \N \N \N 419 11827469 EMSA \N CCCCACCCUCUU \N \N \N \N \N \N \N \N \N \N \N \N 420 11827469 EMSA \N CCCCACCCUCUUCCCCAAG \N \N \N \N \N \N \N \N \N \N \N \N 421 11827469 EMSA \N CCCCAAGCCCCACCCUCUU \N \N \N \N \N \N \N \N \N \N \N \N 422 12011088 EMSA \N CUGGGCUUUUUUUUUCUCUUUCUCUCCUUUCUUUUUCUUCUUCCCUCCCUA \N \N \N \N \N \N \N \N \N \N \N \N 423 12011088 EMSA \N CUGGGCUUGUGUGUUCUCUUUCUCUCCUUUCUUUUUCUUCUUCCCUCCCUA \N \N \N \N \N \N \N \N \N \N \N \N 424 12011088 EMSA \N CUGGGCUUUUUUUUUCUCUGUCUCUCCUGUCUGGGUCUGCGUCCCUCCCUA \N \N \N \N \N \N \N \N \N \N \N \N 425 11753385 EMSA \N CUGGCCAUGCCGGGAGAACUCUAACUCCCCCAUGGAG \N \N \N \N \N \N \N \N \N \N \N \N 426 15514164 EMSA \N UAAACUCCCUCCAUCCCAACCUGGCUCCCUCCCACCCAACCAACUUUCCCCCCAACCCGGAAACAGACAAGCAACCCAAACUGAACCCCCCCAAAAGCCAAAAAAUGGGAGACAAUUUCACAUGGACUUUGGAAAAUAUUUUUUUCCUUUGCAUUCAUCUCUCAAACUUAGUUUUUAUCUUUGACCAACCGAACAUGACCAAAAACCAAAAGUGCAUUCAACCUUACCAAAAAAAAAAAAAAAAAAAAAAGAAUAAAUAAAUAAG \N \N \N \N \N \N \N \N \N \N \N \N 427 15514164 EMSA \N UAAAUGAACUCAAUCUAAAUUAAAAAAGAAAGAAAUUUGAAAAAACUUUCUCUUUGCCAUUUCUUCUUCUUCUUUUUUAACUGAAAGCUGAAUCCUUCCAUUUCUUCUGCACAUCUACUUGCUUAAAUUGUGGGCAAAAGAGAAAAAGAAGGAUUGAUCAGAGCAUUGUGCAAUACAGUUUCAUUAACUCCUUCCCCCGCUCCCCCAAAAAUUUGAAUUUUUUUUUCAACACUCUUACACCUGUUAUGGAAAAUGUCAACCUUUGUAAGAAAACCAAAAUAAAAAUUGAAAAAUAAAAACCAUAAACAUUUGC \N \N \N \N \N \N \N \N \N \N \N \N 428 15514164 EMSA \N UAAACCAAACUCUAUCUGAAAUCCCAACAAAAAAAAUUUAACUCCAUAUGUGUUCCUCUUGUUCUAAUCUUGUCAACCAGUGCAAGUGACCGACAAAAUUCCAGUUAUUUAUUUCCAAAAUGUUUGGAAACAGUAUAAUUUGACAAAGAAAAAUGAUACUUCUCUUUUUUUGCUGUUCCACCAAAUACAAUUCAAAUGCUUUUUGUUUUAUUUUUUUACCAAUUCCAAUUUCAAAAUGUCUCAAUGGUGCUAUAAUAAAUAAACUUCAACACUCUUUAUGAUAAC \N \N \N \N \N \N \N \N \N \N \N \N 429 19703396 EMSA \N UGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCC \N \N \N \N \N \N \N \N \N \N \N \N 430 19713958 EMSA \N UGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCC \N \N \N \N \N \N \N \N \N \N \N \N 431 18566191 UV cross-linking \N CAGGUCGUAUAGUUACCUCCUUGUGGGCAAAAUCCCUGCCCUAAAACUAUGCAACCCCCUAUAGUGAGUCGUAUUACAUC \N \N \N \N \N \N \N \N \N \N \N \N 432 11604510 SELEX \N ACCCMYMSGCMS 11604510_G3BP1.txt \N \N \N \N \N \N 0 \N \N \N \N 433 18650551 UV cross-linking \N CAUAAAUUAUUUUCAAGUGUAACUUAUUAACCUAUUUAUUAUUUAUGUAUUUAUUUAAGC \N \N \N \N \N \N \N \N \N \N \N \N 434 18829526 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE12215 \N \N \N \N \N \N \N \N \N Exp434.zip 435 19033365 genome-wide in vivo immunoprecipitation RIP-chip \N \N see supplementary info \N \N \N \N \N \N \N \N \N Exp435.zip 436 20412850 UV cross-linking \N ACCACUAGCUGUCAUUUUGUACUCUGUAUUUAUUCCAGGGCUGCUUCUGAUUAUUUAGUUUGUUCUUUCCCUGGAGACCUGUUAGAAACAUAAGGGCGUAUGG \N \N \N \N \N \N \N \N \N \N \N \N 437 17603996 UV cross-linking \N CUUCUUCCUCGGCGCUGCCGACGUGGUGGCUGCC \N \N \N \N \N \N \N \N \N \N \N \N 438 18574469 protein affinity purification biotinylated RNA CUUCCCUGGGAACCAAAUUCAAAUAAAGAGACUUUUCCAA \N \N \N \N \N \N \N \N \N \N \N \N 439 16787927 protein affinity purification biotinylated RNA CCUCAAAUCUGAGGGAGCUGAGUAACACCAUCGAUCAUGAUGUAGAGUGUGGUUAUGAACUUUAUAGUUGUUUUAUAUGUUGCUAUAAUAAAGUUGUGUUCUGCAUUCGU \N \N \N \N \N \N \N \N \N \N \N \N 440 16834569 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 441 17030625 protein affinity purification biotinylated RNA AGACUUUAUGUAGUUUUUAUAUGUUGUAAUAUUUCUUCAAAUAAAUCUCUCCUAUAA \N \N \N \N \N \N \N \N \N \N \N \N 442 15951444 EMSA \N ACUGCCCUUUCUUACCUUUCUUUACAUAAUUGAAAUAGGUAUCCUGACCA \N \N \N \N \N \N \N \N \N \N \N \N 443 16219914 EMSA \N AUUUAAUUUAAUUUAAUUUAAUUUAAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 444 16219914 EMSA \N UCUUUAAAUAUUAAAAUAAUUACUACUAA \N \N \N \N \N \N \N \N \N \N \N \N 445 16219914 EMSA \N UCUUGCGCGAUUAAAAUAAUUACUACUAA \N \N \N \N \N \N \N \N \N \N \N \N 446 16219914 EMSA \N UCUUUAAAUAUUGGCCGAAUUACUACUAA \N \N \N \N \N \N \N \N \N \N \N \N 447 16289864 UV cross-linking \N UUAUUUAUAAAUCAUUUCCUUUCUUUUUUUCCCCAAAGUCAGAAUUGCUCAAAGAAAAUUAUUUAUUGUU \N \N \N \N \N \N \N \N \N \N \N \N 448 16289864 UV cross-linking \N UUUUUUAAAGUUUCUUGCAUUUAUUAUUCUCAAAAGUUUUUUCUAAGUUAAACAGUCAGUAUGCAAUCUUAAUAUAUGCUUUCUUUU \N \N \N \N \N \N \N \N \N \N \N \N 449 16289864 UV cross-linking \N UUUUUAUGUAAAACAUUUUUAGAACUCCAGUUUUCAAAUCAUGUUUGAAUCUACAUUCACUUUUUUUUGUUUUCUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 450 16289864 EMSA \N UUUUUUAAAGUUUCUUGCAUUUAUUAUUCUCAAAAGUUUUUUCUAAGUUAAACAGUCAGUAUGCAAUCUUAAUAUAUGCUUUCUUUU \N \N \N \N \N \N \N \N \N \N \N \N 451 16289864 EMSA \N UUUUUAUGUAAAACAUUUUUAGAACUCCAGUUUUCAAAUCAUGUUUGAAUCUACAUUCACUUUUUUUUGUUUUCUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 452 12819194 EMSA \N GUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUAC \N \N \N \N \N \N \N \N \N \N \N \N 453 15257295 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE1361 \N \N \N \N \N \N \N \N \N Exp453.zip 454 9478982 UV cross-linking \N GUCUCUUCCAAUGAUUCCAUUUCAAUAUAUUCUUCUUUUUAAAGUAUUACACAUUUCCACUUC \N \N \N \N \N \N \N \N \N \N \N \N 455 11514570 fluorescence methods fluorescence anisotropy GUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUAG \N \N \N \N \N \N \N \N \N \N \N \N 456 11514570 fluorescence methods fluorescence anisotropy GAUCUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 457 11856759 EMSA \N UCAGCUAUUUACUGCCAAAGGGAAAUAUCAUUUAUUUUUUACAUUAUUAAGAAAAAAAGAUUUAUUUAUUUAAGACAGUCCCAUCAAAACUCCUGUCUUUGGAAAUC \N \N \N \N \N \N \N \N \N \N \N \N 458 12030365 EMSA \N GGACCGUUGCACAAAAAGGAAAGUUUGGGAAGGGAUGGGAGAGUGGCUUGCUGAUGUUCCUUGUUGUUUUUUUUUUCUUUUCUUUUCUUUCUUCUUCUUUUUUUUUUUUUUUUUUUUUUUUCUGUUUGUGGUCCGGCCUUCUUUUGUGUGU \N \N \N \N \N \N \N \N \N \N \N \N 459 10037807 genome-wide in vivo immunoprecipitation RNA pulldown His-tagged protein + cloning \N \N \N \N \N \N \N \N \N \N \N \N \N 460 11046149 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 461 11046149 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 462 15621528 genome-wide in vivo immunoprecipitation RIP-chip \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 463 19396385 fluorescence methods fluorescence titration GAUUGGAAGGGAGGGAGGUG \N \N \N \N \N \N \N \N \N \N \N \N 464 18163424 yeast three-hybrid screen U-rich; g-quartets; see table in article for list of hits \N \N \N 1 \N \N \N \N \N \N \N \N \N 465 16006558 EMSA \N GGGGUUGGGGAUUUAGCUCAGUGGUAGAGCGCUUGCCUAGCAAGCGCAAGGCCCUGGGUUCGGUCCUCAGCUCUGG \N \N \N \N \N \N \N \N \N \N \N \N 466 16819831 EMSA \N GGCUGCGGUGUGGAAGGUGAGGCUGGGUUGCGAGCU \N \N \N \N \N \N \N \N \N \N \N \N 467 7688265 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 468 7688265 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 469 12927206 SELEX SELEX with starting pool made from cDNA library DWGG(N)(0-2)DWGG(N)(0-2)DWGG(N)(0-2)DWGG; (U)(5-23) \N \N \N \N \N \N \N \N \N \N \N \N 470 12927206 EMSA \N UGAAACUGGGAGGACUGUGUGAAGUGGUCUCGGUGGUGGUGAUCAAAGAAGUGAAGCUGGGAGUACUGUGUGAGGUGGUCUCAGUGCUGGUGAUUGAAGAAGUGAAGCCUGGAAUACUGUGUGACGUGGUCUCAGUGGUGGUGACCGCAGAAGUCAAGCUGGGGGUACUGUAUGAUAUGGAAUCAGUGGUGGUGAUCGAAGAAGUGAAGCUGGGAGUACUAUGUGAGGGUGUCUUGAUGGUGGCAAUCGAAGAAGUGAAGCUGGGAAUACUGUCUGAGGUGGUCCCAGAGAUGGUGAUUGAAGAGGUGAAGCUGGCAGUACUGUUGGAUGUGGACUCGGUGAUGUUGA \N \N \N \N \N \N \N \N \N \N \N \N 471 15805463 SELEX \N GGGCKAAGGARK; KAGCGRCUGG 15805463_FMR1.txt \N 1 \N \N \N \N 0 \N \N \N \N 472 12745094 yeast three-hybrid screen U-rich; see table in article \N \N \N \N \N \N \N \N \N \N \N \N \N 473 16260624 UV cross-linking \N GGGCGAAUUGGGCCCGACGUCGCAUGCUCCCGGCCGCCAUGGCCGCGGGAUUCUCACCACCAUGCCUUCCUUGCUCCCUAAUCUCAAUCACUAGUGCGGCCGCCUGCA \N \N \N \N \N \N \N \N \N \N \N \N 475 17264215 EMSA \N UAUUUUUUUUUUAAUACAAAAUGACAAAAUG \N \N \N \N \N \N \N \N \N \N \N \N 476 17264215 EMSA \N UAUUUUUUUUUUAAUACAAAAUGCACGCGCU \N \N \N \N \N \N \N \N \N \N \N \N 477 17971870 genome-wide in vivo immunoprecipitation RIP-chip ACAAA \N \N \N \N \N \N \N \N \N \N \N \N 478 18958492 genome-wide in vivo immunoprecipitation RIP-chip \N \N \N \N \N \N \N \N \N \N \N \N \N 479 17855403 EMSA \N UUGCCCCCGGGAAACCGCGGCGGGGGAGCGAGCGGCGAGCUGUGAGCCCGCUUCGCUCCCCGGGGGUACACUACU \N \N \N 1 expt done in archaeal species; don't include \N \N \N \N \N \N \N 480 16931875 EMSA \N GGGAUCAUUCAAUAAACUGAUCUUCCGGAUUACCAUGCUUAAGACAUCACGCCUCCAUAUGUCUAUAUAAAGCGCAAAUGGCUGGAAGUAGACCAAUUUUUUUUGUUCCUAGCUUUUCAUUAUUGAAAUCUAAUCCAGUUUUAAUGGUUUUUCUUAAUUAAGAAAACAAAUUAUCAUUGGUUCGCUCUAGGUGUACAUAU \N \N \N \N \N \N \N \N \N \N \N \N 481 17579712 EMSA \N UUCGUGCUGACCUGUCCCUUUUUUUUCCACAGC \N \N \N \N \N \N \N \N \N \N \N \N 482 19464723 UV cross-linking \N GGGACUGCUCGAGGAUCUCUUCUCUCCCUCCGCGGUUCUUCCUCGACUCGGACCGGCUCAUCUCGGCUAGAGGCGGCAGUCCUCAGUACUCUUACUCUUUUCUGUAAAGAGGAGACUGCUGGACUCGCCGCCGCCCGAGGCGGAGCCUGAGCCAAGUUCCGAGCGAGGAGACGCGGGGGGAGGAUCAGCACCCGAGAGGGGAUGUGAAUUCC \N \N \N \N \N \N \N \N \N \N \N \N 483 17965020 protein affinity purification biotinylated RNA CUAAUGAUCAUAUUUAUUUAUUUAUAUGAACCAUG \N \N \N \N \N \N \N \N \N \N \N \N 484 17965020 protein affinity purification biotinylated RNA AAACCUAUUUAUUAAUAUUUAAAACUAUUUAUAUG \N \N \N \N \N \N \N \N \N \N \N \N 485 17965020 protein affinity purification biotinylated RNA GUUUUUAAUUUAUUUAUUAAGAUGGAUUCU \N \N \N \N \N \N \N \N \N \N \N \N 486 17965020 protein affinity purification biotinylated RNA UUUUUAAAUAUUUAUUUAUUUAUUUAUUUAAUUUU \N \N \N \N \N \N \N \N \N \N \N \N 487 17965020 protein affinity purification biotinylated RNA UUAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 488 9001221 SELEX \N AGGGA 9001221_NONO.txt \N \N \N \N 9001221_NONO_aligned.txt 9001221_NONO_motif.txt 1 488_9001221_1486_NONO_RRMx2_logo.png 488_9001221.pwm 488_9001221.pfm \N 489 12403470 SELEX also experiment of SFPQ & NONO combined UGGAGAGGAAC 12403470_SFPQ.txt \N \N \N \N \N \N 0 \N \N \N \N 490 12403470 SELEX also experiment of SFPQ & NONO combined GAGAGGAAC 12403470_NONO.txt \N \N \N \N \N \N 0 \N \N \N \N 491 15687492 fluorescence methods fluorescence titration (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 494 18768985 EMSA \N CAGCUCGCACCGUGUUAAUUGUUGUUAAUCCUCACAAACACUACUAAGUUUGUCAGCUCACACAGGCGAACUACU \N \N \N \N \N \N \N \N \N \N \N \N 493 20412850 protein affinity purification biotinylated RNA ACCACUAGCUGUCAUUUUGUACUCUGUAUUUAUUCCAGGGCUGCUUCUGAUUAUUUAGUUUGUUCUUUCCCUGGAGACCUGUUAGAAACAUAAGGGCGUAUGG \N \N \N \N \N \N \N \N \N \N \N \N 496 19339348 protein affinity purification biotinylated RNA AAGCAACUAUUCAUUUUUGAUUCUUUGGUUAAAAAAUGUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 497 17488725 EMSA \N UAUUGCUUGGGUAAUUUUUUUUUUUAGUUGCUAAUUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 498 17488725 EMSA \N GCCAAUUCCACUAAUUGUUUGGGGUAAGUUCUUGCUUUGUUCAAACUGCAGAUUGAAA \N \N \N \N \N \N \N \N \N \N \N \N 499 17580305 EMSA \N GUAAUUUAUUUAUGUUGAACAGGAAAUAAAUAAAUUACCCUGUCUC \N \N \N \N \N \N \N \N \N \N \N \N 500 17682065 genome-wide in vivo immunoprecipitation RIP-chip UUGCCACCUCCUGCUCCUGCCCAGACAG \N see supplementary info 1 \N \N \N \N \N \N \N \N Exp500.zip 501 16537914 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE1433 \N \N \N \N \N \N \N \N \N Exp501.zip 502 16091628 UV cross-linking \N AGAAUUAAAUUCUUUAAUACAAAAUGCUUUUUUUUUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 503 16227602 genome-wide in vivo immunoprecipitation RIP-chip \N \N \N 1 \N \N \N \N \N \N \N \N \N 504 14736875 protein affinity purification biotinylated RNA UUUUCUCUUGUCUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 505 15514971 UV cross-linking \N UCAUAACAUAAAUUAUUUUCAAGUGUAACUUAUUAACCUAUUUAUUAUUUAUGUAUUUAUUUAAGCAUCAAAUAUUUGUGCAAGAAUUUGGAAAAAUAGAAGAUGAAUCAUUGAUUGAAUAGUUAUAAAGAUGUUAUAGUAAAUUUAUUUUAUUUUAGAUAUUAAAUGAUGUUUUAUUAGAUAAAUUUCAAUCAGGGUUUUUAGA \N \N \N \N \N \N \N \N \N \N \N \N 506 14662769 EMSA \N CUACUGACCAUAUUUAUUUAUUUAUGUGAAGAAUUUAAUUUAAUUAUUUAAUAUUUAUAC \N \N \N \N \N \N \N \N \N \N \N \N 507 8576255 SELEX \N (U)(3-11) 8576255_TIA1.txt \N \N \N \N \N \N 0 \N \N \N \N 508 8576255 SELEX \N (U)(3-11) 8576255_TIAR.txt \N \N \N \N \N \N 0 \N \N \N \N 509 12855701 EMSA \N AUGUGAAGAAUUUAAUUUAAUUAUUUAAUAUUUAUAC \N \N \N \N \N \N \N \N \N \N \N \N 510 12356730 UV cross-linking \N ACCAGACAAGAGUUUAAGAGAUAUGUAUCCUUUUAAAUUUUCUUGUCUUCUUGU \N \N \N \N \N \N \N \N \N \N \N \N 511 12356730 UV cross-linking \N ACCAGACAAGAGUUUAAGAGAUAUGUAUCCUUUUCAGUUUUCUUGUCUUCUUGU \N \N \N \N \N \N \N \N \N \N \N \N 512 12356730 UV cross-linking \N ACCAGACAAGAGAAAAAACGUGUAUGGAAUUUUUAAAUUUUCUAUACAGGAUUUU \N \N \N \N \N \N \N \N \N \N \N \N 513 18067274 EMSA \N UUCGUGCUGACCCUGUCCCUUUUUUUUCCACAGCUGCA \N \N \N \N \N \N \N \N \N \N \N \N 514 18842594 fluorescence methods fluorescence anisotropy UUUUUUUUUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 515 19470458 EMSA \N CCCAGACUAACCUGUCUCGCUUUUCCCCUCCGCUGCGGCCACUCCCUGAA \N \N 1 \N \N \N \N \N \N \N \N \N 516 19470458 EMSA \N CCUGUCUCGCUUUUCCCCUCCGCUGCGGCCAC \N \N 1 \N \N \N \N \N \N \N \N \N 517 15661845 UV cross-linking \N UUUUCAGG \N \N \N 1 Experiment performed with protein complex (U2AF65/35) \N \N \N \N \N \N \N 518 12189174 UV cross-linking \N CCUCUUAUCUUCCUCCCACAG \N \N \N \N \N \N \N \N \N \N \N \N 519 12189174 UV cross-linking \N CCUCUUAUCUUCCGGCCAAAG \N \N \N \N \N \N \N \N \N \N \N \N 520 12558503 UV cross-linking \N UAUUGCUUGGGUAAUUUUUUUUUUUAGUUGCUAAUUUAUUGUUUUC \N \N \N \N \N \N \N \N \N \N \N \N 521 14730023 SELEX RRMs 1 and 2 \N 14730023_U2AF2_RRM12.txt \N \N \N \N \N \N 0 \N \N \N \N 522 14730023 SELEX RRMs 1, 2 and 3 \N 14730023_U2AF2_RRM123.txt \N \N \N \N \N \N 0 \N \N \N \N 523 14506271 EMSA \N GGGCUCGUCUCGAGGGUGCUGACUGGCUUCUUCUCUCUUUUUCCCUCAGGCCUACUCUUCU \N \N \N \N \N \N \N \N \N \N \N \N 524 15200955 genome-wide in vivo immunoprecipitation RIP-chip \N \N see supplementary info \N \N \N \N \N \N \N \N \N Exp524.zip 525 10864047 EMSA \N GUUUUUGUUGUUUUUUUUCUAGUGUC \N \N \N \N \N \N \N \N \N \N \N \N 526 10617206 SELEX U2AF heterodimer UUU(UUUU/CCCC)UNUAGGUNNNNNNNNNN 10617206_U2AF65_U2AF35.txt \N \N \N \N 10617206_U2AF65_U2AF35_aligned.txt 10617206_U2AF65_U2AF35_motif.txt 0 \N \N \N \N 527 7489484 UV cross-linking \N GGCCACCAGAAGGUAUG \N \N \N \N \N \N \N \N \N \N \N \N 528 7489484 UV cross-linking \N GGCUUUUUUUUUUUUAG \N \N \N \N \N \N \N \N \N \N \N \N 529 7489484 UV cross-linking \N GGCCACCACAACCUAUG \N \N \N \N \N \N \N \N \N \N \N \N 530 7489484 UV cross-linking \N GGCCACCUGUUGGUAUG \N \N \N \N \N \N \N \N \N \N \N \N 531 19915141 SELEX \N DKAGUHUA; DKAG(N)(0-8)UHUA 19915141_Mex-3.txt \N \N \N \N \N \N 0 \N \N \N \N 532 17267406 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 533 14769789 EMSA \N UCAGCUAUUUACUGCCAAAGGGAAAUAUCAUUUAUUUUUUACAUUAUUAAGAAAAAAAGAUUUAUUUAUUUAAGACAGUCCCAUCAAAACUCCUGUCUUUGGAAAUC \N \N \N \N \N \N \N \N \N \N \N \N 534 17938241 EMSA \N AAAAAAAAAAAAAAAAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 535 11274061 UV cross-linking \N GUAAUAUUUAUAUAUUUAUAUUUUUAAAAUAUUUAUUUAUUUAUUUAUUUAA \N \N \N \N \N \N \N \N \N \N \N \N 536 12060656 EMSA \N CCCGGCUAGUAGAAACUAAACUUACCGGG \N \N \N \N \N \N \N \N \N \N \N \N 537 12060656 EMSA \N CCCGGGAUCUAGAAACUAAACUUACCGGG \N \N \N \N \N \N \N \N \N \N \N \N 538 20129943 UV cross-linking \N UUGCGCAGUGGAGUUCAAC \N \N \N \N \N \N \N \N \N \N \N \N 539 18364396 EMSA \N CAGUCGCAUAGUGCA \N \N \N \N \N \N \N \N \N \N \N \N 540 17913700 EMSA \N GGCGACUGGGGGGUCAGGG \N \N \N \N \N \N \N \N \N \N \N \N 541 16000324 protein affinity purification biotinylated RNA GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG \N \N \N \N \N \N \N \N \N \N \N \N 542 17101798 UV cross-linking UACCAAGGCGUGCAAGAACCACCCGAAAUCCACACGAAAUACAAAACUUUUCAAGACCCUCAAGAACGAACCGCAAGAUAAUCUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 543 17101798 UV cross-linking UACCUGCUCGUGCUGCUACCACCCGAAAUCCACACGAAAUACAAAACUUUUCAAGACCCUCAAGAACGAACCGCAAGAUAAUCUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 544 14709600 protein affinity purification biotinylated RNA AAUGUUGAAGAAGGAAAAUGCGGAAGUCG \N \N \N \N \N \N \N \N \N \N \N \N 545 14709600 protein affinity purification biotinylated RNA GUGGGGAAGAUGAAAGAAGUCAGAAUUUG \N \N \N \N \N \N \N \N \N \N \N \N 546 8769651 UV cross-linking \N UCUUCAAUCAACA \N \N \N \N \N \N \N \N \N \N \N \N 547 9546399 SELEX \N GAA 9546399_TRA2B.txt \N \N \N \N \N \N 0 \N \N \N \N 548 10931943 UV cross-linking \N AAAGAAGGAAAAGAAGGAAAAGAAGGA \N \N \N \N \N \N \N \N \N \N \N \N 549 11557340 SELEX non-randomized pool: RNA was derived from genomic sequence GGGUAGCUGAUCAAUU(A)(5-18)CACUGAAUCGA; CAAAA; (AAUAACAUAG)(N); (UG)(N) 11557340_TRA2B.txt \N \N \N \N \N \N 0 \N \N \N \N 550 1674449 EMSA \N GCACGCCAAAUCAACGAUCAACAUUUCAACACG \N \N \N \N \N \N \N \N \N \N \N \N 551 1518835 UV cross-linking \N UCUUCAAUCAACAUCUUCAAUCAACA \N \N \N \N \N \N \N \N \N \N \N \N 552 1518835 UV cross-linking \N UCUACAAUCAACAUCUACAAUCAACA \N \N \N \N \N \N \N \N \N \N \N \N 553 19196985 UV cross-linking AGAAACGAGACAGAGAGAGAGAGAGAGAGAGAGACGGGGAGAAAAG \N \N \N \N \N \N \N \N \N \N \N \N 554 19667073 EMSA \N AUUUAGGGAUUUAGGGUAUG \N \N \N \N \N \N \N \N \N \N \N \N 555 20010808 protein affinity purification biotinylated RNA AGGUAGGGCCCUAAGGGCA \N \N \N \N \N \N \N \N \N \N \N \N 556 18953025 EMSA \N UGAGAAGGGCGUAGG \N \N \N \N \N \N \N \N \N \N \N \N 557 17558416 protein affinity purification biotinylated RNA CGUCAGAAUAAUGUCAAAGUGCUGCCAGAAGGAGCACUUAGGGCGUAAAACUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGAAGCCAAGUUGGGCUUUAAAGUGCAGGGCCUGCUGAUGUUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA \N \N \N \N \N \N \N \N \N \N \N \N 558 17869320 UV cross-linking \N AUGUCUCUUUGGCUGCCUAGUGAGGCCACUGUCUACUUGCCUCCUGUCCCAGUAUCUAAGGUUGUAAGCACGGAUGAAUAUGUUGCACGCACAAACAUAUAUUAUCAUGCAGGAACAUCCAGACUACUU \N \N \N \N \N \N \N \N \N \N \N \N 559 17869320 UV cross-linking \N UAGUGUAGUGUAGUGUAGUG \N \N \N \N \N \N \N \N \N \N \N \N 560 17925491 genome-wide in vivo immunoprecipitation RIP-chip UAGGGW \N data not released \N \N \N \N \N \N \N \N \N \N 561 17925491 EMSA \N AGACCCUUUAGGGUUAGGGACAUCC \N \N \N \N \N \N \N \N \N \N \N 562 17950949 UV cross-linking \N GCUAAACGCAAAAAACGUAAGCUGUAAGUAUUGUAUGUAUGUUGAAUUAGUGUUGUUUGUUGUGUAUAUGUUUGUAUGU \N \N \N \N \N \N \N \N \N \N \N \N 563 18391021 EMSA \N UGCAGAUGCUUAGUUUGUGU \N \N \N \N \N \N \N \N \N \N \N \N 564 18391021 EMSA \N UGCAGAUGGUUAGUUUGUGU \N \N \N \N \N \N \N \N \N \N \N \N 565 18371932 protein affinity purification biotinylated RNA CCAGCAUUAUGAAAGU \N \N \N \N \N \N \N \N \N \N \N \N 566 18371932 protein affinity purification biotinylated RNA CCCGCAUUAUGAAAGU \N \N \N \N \N \N \N \N \N \N \N \N 567 18371932 protein affinity purification biotinylated RNA CCAGCAUUAUGAACGU \N \N \N \N \N \N \N \N \N \N \N \N 569 17287399 UV cross-linking \N UAUAAUGUUCUCUUUUUAGAAAGGU \N \N \N \N \N \N \N \N \N \N \N \N 570 17287399 UV cross-linking \N GGACAAGUCCUAUUUUCAAGAGAAG \N \N \N \N \N \N \N \N \N \N \N \N 571 16548521 protein affinity purification biotinylated RNA GCCAAGGAGCC \N \N \N \N \N \N \N \N \N \N \N \N 572 17298175 UV cross-linking \N UAGGGACUUAGGGUUGUAGGGA \N \N \N \N \N \N \N \N \N \N \N \N 573 17353911 EMSA \N GAGAAUUCGCUGGUCUCGAACUCCUGACCUCAAGUGAUCCCACCGAAUUCGA \N \N \N \N \N \N \N \N \N \N \N \N 574 17353911 EMSA \N GAGAAUUCGCUCCUGACCUCAAGUGAUCCCACCGAAUUCGA \N \N \N \N \N \N \N \N \N \N \N \N 575 15342234 fluorescence methods fluorescence titration UUAGGGUUAGGG \N \N \N \N \N \N \N \N \N \N \N \N 576 15155834 UV cross-linking \N ACGUAAGACUGGGGGCAGGAUGGCGGAAAGGAAGGGGCGUGGUGGCUAGAGGGAAGAGAAGAAACAGAAGGGGCUCAGUUCACCUUGAUAAGGUGCUUCCGA \N \N \N \N \N \N \N \N \N \N \N \N 577 15208309 EMSA \N UAUGAUAGGGACUUAGGGUG \N \N \N \N \N \N \N \N \N \N \N \N 578 15208309 EMSA \N GCAGGGUUGAGGGGAGCAGGGUC \N \N \N \N \N \N \N \N \N \N \N \N 579 15828859 UV cross-linking \N GACACGGUAAGGGGAAGAGCA \N \N \N \N \N \N \N \N \N \N \N \N 580 15828859 UV cross-linking \N GGGGAAGAGCACCCCAGUCCCGCGUCUCUGA \N \N \N \N \N \N \N \N \N \N \N \N 581 15828859 UV cross-linking \N GAUGAUAGGGACUUAGGGUG \N \N \N \N \N \N \N \N \N \N \N \N 582 15828859 UV cross-linking \N GGCUCCAGCUUCAAGAGACGUAGGUCCAAAGACACGGUAAGGGGAAGAGCACCCCA \N \N \N \N \N \N \N \N \N \N \N \N 583 11779509 protein affinity purification biotinylated RNA UCCAUUCGAUUAGUGAACGGAUC \N \N \N \N \N \N \N \N \N \N \N \N 584 11886857 protein affinity purification biotinylated RNA GCCAAGGAGCCAGAGAGCAUG \N \N \N 1 I dont feel like figuring this out \N \N \N \N \N \N \N 585 11886857 EMSA \N GCCAAGGAGCCAGAGAGCAUG \N \N \N 1 I dont feel like figuring this out \N \N \N \N \N \N \N 586 14703516 protein affinity purification biotinylated RNA UUACUCGACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCCUAGACUAGAGCCC \N \N \N \N \N \N \N \N \N \N \N \N 587 14703516 protein affinity purification biotinylated RNA UUACUCGACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCGUAAGUACGCGCCC \N \N \N \N \N \N \N \N \N \N \N \N 588 14703516 protein affinity purification biotinylated RNA UUACUCGACAGAGGAGAGCAAGAAAUGGAGCUAGACUAGAGCCC \N \N \N \N \N \N \N \N \N \N \N \N 589 10660597 UV cross-linking \N GGACCGUUGCACAAAAAGGAAAGUUUGGGAAGGGAUGGGAGAGUGGCUUCGUGAUGUUCCUUGUUGUUUUUUUUUUCUUUUCUUUUCUUUCUUCUUCUUUUUUUUUUUUUUUUUUUUUUUUCUGUUUGUGGUCCGGCCUUCUUUUGUGUGUGCGUGUGAUGCA \N \N \N \N \N \N \N \N \N \N \N \N 590 10660597 UV cross-linking \N UUUUUUAUUUUAUUUUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 591 10660597 EMSA \N GGACCGUUGCACAAAAAGGAAAGUUUGGGAAGGGAUGGGAGAGUGGCUUCGUGAUGUUCCUUGUUGUUUUUUUUUUCUUUUCUUUUCUUUCUUCUUCUUUUUUUUUUUUUUUUUUUUUUUUCUGUUUGUGGUCCGGCCUUCUUUUGUGUGUGCGUGUGAUGCA \N \N \N \N \N \N \N \N \N \N \N \N 592 10958793 protein affinity purification biotinylated RNA AUAGACAGAAUCAGCACCAGUGCUCAUGGAGAAAAUUGGACC \N \N \N \N \N \N \N \N \N \N \N \N 593 10958793 protein affinity purification biotinylated RNA CCCCGGAACCACAGCCUCCUUUCAAUAACCAUGAGUAUCAGG \N \N \N \N \N \N \N \N \N \N \N \N 594 10958793 protein affinity purification biotinylated RNA GAGUAUCAGGAUGAAGAGGAGACCCCACAUGCUACAAGCACA \N \N \N \N \N \N \N \N \N \N \N \N 595 9353343 EMSA \N AAGAAUGGGAAUAUUUUAUACUGACAGAAAUCAGUAAUAUUUAUAUAUUUAUAUUUUUAAAAUAUUUAUUUAUUUAUUUAUUUAAGUUCAUAUUCCAUAUUUAUUCAAGAUGUUUUACCGUAAUAAUUAUAUUAAAAAUAUGCUUCUAAA \N \N \N \N \N \N \N \N \N \N \N \N 596 9353343 UV cross-linking \N AAGAAUGGGAAUAUUUUAUACUGACAGAAAUCAGUAAUAUUUAUAUAUUUAUAUUUUUAAAAUAUUUAUUUAUUUAUUUAUUUAAGUUCAUAUUCCAUAUUUAUUCAAGAUGUUUUACCGUAAUAAUUAUAUUAAAAAUAUGCUUCUAAA \N \N \N \N \N \N \N \N \N \N \N \N 597 9353343 UV cross-linking \N GGAUCCAUUUAUUUAUUUAUUUAAGCUUGG \N \N \N \N \N \N \N \N \N \N \N \N 598 9740129 filter binding assay \N GGGCCACCAACGACAUUUUAGGUUAGGAAUAGGGAAUUAAGGUUGAUAUAAAUAGUGCCCAUGGAUC \N \N \N \N \N \N \N \N \N \N \N \N 599 9925777 UV cross-linking \N GAAUUCUUAGAUCGAUGGGAAAAAAUUCGGUUAAGGCUAGC \N \N \N \N \N \N \N \N \N \N \N \N 600 10215609 UV cross-linking \N GUAGACUUGCAGAGGAUAUUUCAAAGGUAGCCAAAGAAGAGGGAAAUUUAUACUAUGUUGUCAAUAGGAAU \N \N \N \N \N \N \N \N \N \N \N \N 601 8473331 UV cross-linking \N GGAUCCAUUUAUUUAUUUAUUUAAGCUUGG \N \N \N \N \N \N \N \N \N \N \N \N 602 7673195 filter binding assay \N UUAGGGUUAGGGUUAGGGUUAGGG \N \N \N \N \N \N \N \N \N \N \N \N 603 18586677 UV cross-linking \N GGAAGGAACAGAAGUAU \N \N \N \N \N \N \N \N \N \N \N \N 604 18586677 UV cross-linking \N GGAAGGAACAGAGGUAU \N \N \N \N \N \N \N \N \N \N \N \N 605 18586677 UV cross-linking \N GGAACCCCCAGACCUCCCUC \N \N \N \N \N \N \N \N \N \N \N \N 606 15798212 UV cross-linking \N AAUUCGGUGGGGCCGGGGCCAAGGGAUC \N \N \N \N \N \N \N \N \N \N \N \N 607 15798212 UV cross-linking \N AAUUCGGUGGGGCCGGAGCCAAGGGAUC \N \N \N \N \N \N \N \N \N \N \N \N 608 11142383 EMSA \N GCAGUGACGACGCGCUGCUCAAGAACUACGGUCUGCUCUCCUGCUUCCGGAAGGACCUGCAUAAGACGGAGACGUACCUGAGGGUCAUGAAGUGCCGCCGCUUCGGGGAGGCCA \N \N \N \N \N \N \N \N \N \N \N \N 609 10523623 UV cross-linking \N GGCUGGCUUUCCACCCAGUGACGACGAGGAUGAAGAGGGUGAG \N \N \N \N \N \N \N \N \N \N \N \N 610 10523623 UV cross-linking \N GGCUGGCUUUCCACCCAGUGACGACGAGUAUUAGCAUGGUGAG \N \N \N \N \N \N \N \N \N \N \N \N 611 10523623 UV cross-linking \N GGCUGGCUUUCCACCCAGUGACGACGAGGACGACGAGGGUGAG \N \N \N \N \N \N \N \N \N \N \N \N 612 10523623 UV cross-linking \N GGCUGGCUUUCCACCCAGUGAUGAAGAGGAUGAAGAGGGUGAG \N \N \N \N \N \N \N \N \N \N \N \N 613 9130721 UV cross-linking \N CCCCUCUCUCUAUCGCUGUCUCUUGAGCCACGC \N \N \N \N \N \N \N \N \N \N \N \N 614 9130721 UV cross-linking \N GAUCCCUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCU \N \N \N \N \N \N \N \N \N \N \N \N 615 9130721 UV cross-linking \N AGGGAAAGACAGGGAGGGAGAGAGAAAGAGAAAGGGACU \N \N \N \N \N \N \N \N \N \N \N \N 616 12032085 single RNA affinity purification His-tag GAUACAGAGAAGAUUAGCAUACGCAA \N \N \N \N \N \N \N \N \N \N \N \N 617 14749385 single RNA affinity purification His-tag GAAAGGAGAGAAGGUUAGCAC \N \N \N \N \N \N \N \N \N \N \N \N 618 14749385 single RNA affinity purification His-tag GAUACAGAGAAGAUUAGCAU \N \N \N \N \N \N \N \N \N \N \N \N 619 19846595 genome-wide in vivo immunoprecipitation RIP-chip CYCUCCYUCYCYC; KUUUGUUUKKUUU; UUUUUUUUUWAAA \N see supplementary ino \N \N \N \N \N \N \N \N \N Exp619.zip 620 20064466 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 621 20086103 EMSA \N GCAUGCUGUUCCUUUUCUUUUCU \N \N \N \N \N \N \N \N \N \N \N \N 622 20159993 EMSA \N GAAUUUUUUUUUUUUAAUUCACUAACUUUACUUUAAAAGA \N \N \N \N \N \N \N \N \N \N \N \N 623 20370918 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE17820 \N \N \N \N \N \N \N \N \N Exp623.zip 624 20459669 EMSA \N UCAGAUAUUUAUAUUUUUAUUUUAUUUUUUUCUACCUUGAGGUCUUUUGA \N \N \N \N \N \N \N \N \N \N \N \N 625 19523901 Isothermal titration calorimetry \N UCAUGCAGUCUG \N \N \N \N \N \N \N \N \N \N \N \N 627 18824697 NMR poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 628 17387282 EMSA \N AAAAAAAAAAAAAAAAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 629 17387282 EMSA \N GGCCGGGCGCGGUGCUCACGCCUGUAAUCCCAGCUCUCAGGGAGGCUAAGAGGCGGGAGGAUAGCUUGAGCCCAGGUAGUUCGAGACCUGCCUGGGCAAUAUAGCGAGACCCCGUUCUCCAGAAAAAGGAAAAAAAAAAACAAAAGACAAAAAAAAAAUAAGCGUAACUUCCCUCAAAGCAACAACCCCCCCCCCCCUUU \N \N \N \N \N \N \N \N \N \N \N \N 630 17387282 EMSA \N GGGGUUGGGGAUUUAGCUCAGUGGUAGAGCGCUUGCCUAGCAAGCGCAAGGCCCUGGGUUCGGUCCUCAGCUCCGCGGAAGACAAAAUAACAAAAAGACCAAAAAAAAACAAGGUAACUGGCACACACAACCUUU \N \N \N \N \N \N \N \N \N \N \N \N 631 10499800 EMSA \N AAAAAAAAAAAAAAAAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 632 1675426 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 633 1675426 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 634 1675426 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 635 8428968 filter binding assay \N AAAAAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 636 18776329 EMSA \N UUAGGGUUAGGGUUAGGGUUAGGG \N \N \N \N \N \N \N \N \N \N \N \N 637 11098054 SELEX \N GGUG 11098054_FUS.txt \N \N \N \N 11098054_FUS_aligned.txt 11098054_FUS_motif.txt 1 637_11098054_1289_FUS_RRMx1.Znf_RanBP2x1_logo.png 637_11098054.pwm 637_11098054.pfm \N 638 11410654 SELEX 9 rounds of selection (Y(U)(n))(n) ENSG00000092345_11410654_9rounds.txt \N \N \N \N \N \N 0 \N \N \N \N 639 15890361 NMR \N GGCAGAGUCCUUCGGGACAUUGCACCUGCC \N \N \N \N \N \N \N \N \N \N \N \N 640 16738410 biosensor analysis \N AGCUUAUCCAUUGCACUCCGGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 641 16738410 biosensor analysis \N AGCUUAUCGAUUGCACUCCCGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 642 16738410 biosensor analysis \N AGCUUAUCAAUUGCACUCCUGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 643 16738410 biosensor analysis \N AGCUUAUCUAUUGCACUCCAGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 644 16738410 biosensor analysis \N AGCGUAGCUUAUCCAUUGCACUCCGGAUGAGCUACGCU \N \N 1 \N \N \N \N \N \N \N \N \N 645 16738410 biosensor analysis \N AGCGUAGCGUAGCUUAUCCAUUGCACUCCGGAUGAGCUACGCUACGCU \N \N 1 \N \N \N \N \N \N \N \N \N 646 16738410 biosensor analysis \N AGCUUAUCCAUUGCACCCCGGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 647 16738410 biosensor analysis \N AGCUUAUCCAUUGCACCCCCCGGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 648 16738410 biosensor analysis \N AGCUUAUCCAUUGCACCCCCCCCGGAUGAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 649 11788718 EMSA \N GGGUAUCCAUUGCACUCCGGAUGCC \N \N \N \N \N \N \N \N \N \N \N \N 650 11788718 EMSA \N GGCAGAGUCCUUCGGGACAUUGCACCUGCC \N \N \N \N \N \N \N \N \N \N \N \N 651 10580480 protein affinity purification streptomycin-bound RNA GGUUCCCAUUGCACUCCGGGAAU \N \N \N \N \N \N \N \N \N \N \N \N 652 10742179 NMR \N GGCAGAGUCCUUCGGGACAUUGCACCUGCC \N \N \N \N \N \N \N \N \N \N \N \N 653 9312034 NMR \N GGCAGAGUCCUUCGGGACAUUGCACCUGCC \N \N \N \N \N \N \N \N \N \N \N \N 654 9312034 NMR \N GGGUUAACAUUGCACUCCGUUGUCC \N \N \N \N \N \N \N \N \N \N \N \N 655 10329165 EMSA \N GGGACAGCAUUGUACCCAGAGUCUCUUCGGAGACAUUGCACCUGGCGCUGUCCC \N \N \N \N \N \N \N \N \N \N \N \N 656 9566313 NMR \N GGCAGAGUCCUUCGGGACAUUGCACCUGCC \N \N \N \N \N \N \N \N \N \N \N \N 657 9814759 EMSA \N GGGAGACCCAAGCUUCCUGGUAUUGCAGUACCUCCAGGAAGCUGCAGGUCG \N \N \N \N \N \N \N \N \N \N \N \N 658 9814759 EMSA \N GGGAGACCCAAGCUUAUCCAUUGCACUCCGGAUGAGCUGCAGGUCG \N \N \N \N \N \N \N \N \N \N \N \N 659 2531658 protein affinity purification biotinylated RNA CAGGGCGAGGCUCAGCCAUUGCACUCCGGUUGUGCUGACCCCUG \N \N \N \N \N \N \N \N \N \N \N \N 660 2531658 protein affinity purification biotinylated RNA AGGGAAGUGACCUUCAUUGCACUGAGAAGGGGUGCUACUCU \N \N \N \N \N \N \N \N \N \N \N \N 661 1717938 SELEX \N AUUGCAC 1717938_10loop.txt \N 1 \N \N 1717938_10loop_aligned.txt 1717938_10loop_motif.txt 1 661_1717938_1274_SNRPA_RRMx2_logo.png 661_1717938.pwm 661_1717938.pfm \N 662 1717938 SELEX \N AUUGCAC 1717938_13loop.txt \N 1 \N \N 1717938_13loop_aligned.txt 1717938_13loop_motif.txt 1 662_1717938_1274_SNRPA_RRMx2_logo.png 662_1717938.pwm 662_1717938.pfm \N 663 1717938 SELEX \N AUUGCAC 1717938_linear.txt \N 1 \N \N 1717938_linear_aligned.txt 1717938_linear_motif.txt 1 663_1717938_1274_SNRPA_RRMx2_logo.png 663_1717938.pwm 663_1717938.pfm \N 664 1508720 filter binding assay \N GGGUAUCCAUUGCACUCCGGAUGCC \N \N \N \N \N \N \N \N \N \N \N \N 665 7520277 NMR \N GGGUAUCCAUUGCACUCCGGAUGCC \N \N \N \N \N \N \N \N \N \N \N \N 666 7520277 NMR \N GAAGAGCCAUUGCACUCCGGUUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 667 20519504 protein affinity purification biotinylated RNA GGCUUUUUGCAUGCGGCG \N \N \N \N \N \N \N \N \N \N \N \N 668 19470458 UV cross-linking \N CCCAGACUAACCUGUCUCGCUUUUCCCCUCCGCUGCGGCCACUCCCUGAA \N \N \N \N \N \N \N \N \N \N \N \N 669 20071745 SELEX starting sequences were doped with known MBNL1 binding site YYYGCUKY; YGCY 20071745_MBNL1.txt \N 1 \N \N 20071745_MBNL1_aligned.txt 20071745_MBNL1_motif.txt 1 669_20071745_1507_MBNL1_Znf_CCCHx4_logo.png 669_20071745.pwm 669_20071745.pfm \N 670 18557632 EMSA \N CUGCUGCUGCUG \N \N \N \N \N \N \N \N \N \N \N \N 671 18557632 SELEX \N AGUCU 18557632_mbl.txt \N 1 \N \N \N \N 0 \N \N \N \N 672 19021294 yeast three-hybrid assay \N CUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUG \N \N \N \N \N \N \N \N \N \N \N \N 673 19021294 yeast three-hybrid assay \N CCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUG \N \N \N \N \N \N \N \N \N \N \N \N 674 19021294 yeast three-hybrid assay \N CCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUG \N \N \N \N \N \N \N \N \N \N \N \N 675 15257297 UV cross-linking \N CUCCCAGACUAACCUGUCUCGCUUUUCCCCUCCGCUGCGGCCACUCCCUGAACCUCAG \N \N \N \N \N \N \N \N \N \N \N \N 676 14722159 yeast three-hybrid assay \N CUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUG \N \N \N \N \N \N \N \N \N \N \N \N 677 14722159 yeast three-hybrid assay \N CCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUG \N \N \N \N \N \N \N \N \N \N \N \N 678 8558240 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 679 9154818 SELEX \N UCAUYUCAUYUCAUY 9154818_NOVA1.txt \N 1 \N \N \N \N 0 \N \N \N \N 680 9789075 SELEX \N GGGRGAGUCAUHSCY 9789075_NOVA2.txt \N \N \N \N 9789075_NOVA2_aligned.txt 9789075_NOVA2_motif.txt 1 680_9789075_1336_NOVA2_KHx3_logo.png 680_9789075.pwm 680_9789075.pfm \N 681 10811881 SELEX selected sequences have complex structure with gaps UCAY 10811881_NOVA1.txt \N 1 \N \N 10811881_NOVA1_aligned.txt 10811881_NOVA1_motif.txt 0 \N \N \N \N 682 10811881 SELEX \N UCAY 10811881_NOVA2.txt \N 1 \N \N 10811881_NOVA2_aligned.txt 10811881_NOVA2_motif.txt 1 682_10811881_1336_NOVA2_KHx3_logo.png 682_10811881.pwm 682_10811881.pfm \N 683 10719891 EMSA \N UCAUYUCAUYUCAUY \N \N \N \N \N \N \N \N \N \N \N \N 684 17655233 NMR Scaffold-independent analysis YCAB \N \N \N \N \N \N \N \N \N \N \N \N 685 18978773 genome-wide in vivo immunoprecipitation HITS-clip YCAY \N see supplementary ino \N \N \N \N \N \N \N \N \N \N 687 20498276 protein affinity purification biotinylated RNA CCAUUUAUAUCAUUUUUUAUAUAUU \N \N \N \N \N \N \N \N \N \N \N \N 688 20001965 protein affinity purification biotinylated RNA AGCCUUUGGGAAGCAGCAGAGAGGAAUCCUCUGCCCAGUGGCAUGCCAUGUUGCUUUCAGGCCUCUCCCAUGCUUGUCUAUGUUCAGAUGUGCAUGUCAUCUGUGACAAAGGAUGAAGAACACAGCAUGUGCCAAAUCGUACUUGUGU \N \N \N \N \N \N \N \N \N \N \N \N 689 20001965 protein affinity purification biotinylated RNA CAGAACGUGUACAUCAUGGUAUUUUAUUUUUGCUUUUGGUAUAGAACUCAGCAGUUCCCAUUUAAAAAAAAAAUCUAACCAGAGCCCAUCACUGCCAUCAUAGCUGGGGCU \N \N \N \N \N \N \N \N \N \N \N \N 690 20001965 protein affinity purification biotinylated RNA AGACUUCUGGUUGUAUUUCUAUAUUUAUUUUUAAAUAUACUGUGUGGGAUACUUAGUGGUAU \N \N \N \N \N \N \N \N \N \N \N \N 691 20064878 EMSA \N UGGAAGCGCGAGGGCCUCAAAGGCCCGCUCUACAUCUUCUGCCUUAGUCUCAGUUUGUGUGUCUUAAUUAUUAUUUGUGUUUUAAUUUAAACACCUCCUCAUGUACAUACCCUGGCCGCCCCCUGCCCCCCAGCCUCUGGCAUUAG \N \N \N \N \N \N \N \N \N \N \N \N 692 20064878 EMSA \N UGGCAUUAGAAUUAUUUAAACAAAAACUAGGCGGUUGAAUGAGAGGUUCCUAAGAGUGCUGGGCAUUUUUAUUUUAUGAAAUACUAUUUAAAGCCUCCUC \N \N \N \N \N \N \N \N \N \N \N \N 697 18986664 EMSA \N CUAAACGCAAAAAACGUAAGCUGUAAGUAUUGUAUGUAUGUUGAUUAGUGUUGUUUGUUGUGUGAUAUGUUUGUAUGU \N \N \N \N \N \N \N \N \N \N \N \N 696 19949288 EMSA \N AUAUUUAUAUUUGCACUUAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUGCUUAUGAAUGUAUUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 698 19010922 EMSA \N CACCUGAGAAGAUUUUAAAACCAUUUAAACGCCACCAAUUGAGCAAGAUGCUGAUUCAUUAUUUAUCAGCCCUAUUCUUUCUAUUCAGGCUGUUGUUGGCUUAGGGCUGGAAGCACA \N \N \N \N \N \N \N \N \N \N \N \N 699 19151756 UV cross-linking \N UAGUAGAACCUUCUUUCCUAAUCCCCUUAUCUUCAUGGAAAUGGACUGACUUUAUGCCUAUGAAGUCC \N \N \N \N \N \N \N \N \N \N \N \N 700 19192392 EMSA \N GGGCGAAAUUGUUAUUUAUUUAUUUAUUCGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCU \N \N \N \N \N \N \N \N \N \N \N \N 701 19359363 EMSA \N CUGUAUUUAUCUGUUUAUUUAUACCUAUUUAUGUAUUUAUUUAUUGAAGUGUGAAAUU \N \N \N \N \N \N \N \N \N \N \N \N 702 18644987 EMSA \N CUUUUCUGUUUAGUUUUUACUUUUUUUGUUUUUGUUUUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 703 17127772 UV cross-linking \N AAUAAAAUUAUUUUUCCCCA \N \N \N \N \N \N \N \N \N \N \N \N 704 17127772 UV cross-linking \N AAUAAAAUUAUUUUUAGCUA \N \N \N \N \N \N \N \N \N \N \N \N 705 17548472 EMSA \N UGGCUUUAUUUGUUUUUUUUGUUUUGUUUUGGUUUUUUUUUUUUUUUUGGC \N \N \N \N \N \N \N \N \N \N \N \N 706 16484227 EMSA \N CACUCAUCAUUUUCACUUGUAAGUUUGCACGGCUACAGAGUAUCUUCCCAGAUUUUUCUAAAGCUGGCAUGGAACGAGCUUUUCUCCCAGUUACCUCCCCAAAUAAGCAUUUAGGGCUAGUGACUCCUCACAAGACAGAACUGGUA \N \N \N \N \N \N \N \N \N \N \N \N 707 16890199 UV cross-linking \N GGGGUCUUUGUCCUCUGUACUGUCUCUCUCCUUGCCCCUAACCCAAAAAGCUUCAUUUUUCUGUGUAGGCUGCACAAGAGCCUUGAUUGAAGAUAUAUUCUUUCUGAACAGUAUUUAAGGUUUCCAAUAAAAUGUACACCCCUCAG \N \N \N \N \N \N \N \N \N \N \N \N 708 16982877 EMSA \N GCUUCGCAUAUUUUAUUUAA \N \N \N \N \N \N \N \N \N \N \N \N 709 16982877 EMSA \N AUGGUUUUAUUUUAAUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 710 15809297 EMSA \N GUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUAG \N \N \N \N \N \N \N \N \N \N \N \N 711 16024790 EMSA \N UGAUGAAAAAUAUUUAUAUAAAAUACAUUUUAUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 712 16168373 EMSA \N UAUUUAUGUUUGCACUUGUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUACAGAUGAAUGUAUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 713 12605686 EMSA \N CUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 714 14981256 genome-wide in vivo immunoprecipitation RIP-chip KKNWWDNNNUKNNUUNUNNH \N see supplementary ino 1 \N \N \N \N \N \N \N \N Exp714.zip 715 12704185 EMSA \N UGCAUGCUGUUCCUUUUCUUUUCUUCUUUUAGCCAUUUUGC \N \N \N \N \N \N \N \N \N \N \N \N 716 12704185 EMSA \N UCUAUUAAUUUAAUUAUUUAAUAAUAUUUAUAUUAAACUCCUUAU \N \N \N \N \N \N \N \N \N \N \N \N 717 12704185 EMSA \N CUUAAAUUCAUUUCACACAUUAAUUUUAUCUCA \N \N \N \N \N \N \N \N \N \N \N \N 718 12900401 EMSA \N UUAUUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 719 12900401 EMSA \N UAUUUAUUUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 720 12900401 EMSA \N UAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 721 12900401 EMSA \N AUUUAUUUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 722 12900401 EMSA \N AUUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 723 12900401 EMSA \N UUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 724 12900401 EMSA \N UUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 725 12900401 EMSA \N AUUUAUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 726 12900401 EMSA \N UUUAUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 727 12900401 EMSA \N UUAUUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 728 12900401 EMSA \N UUAUUUAUUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 729 12900401 EMSA \N UUAUUUAUUUAUUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 730 12900401 EMSA \N UUAUUUAUUUAUUUAUUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 731 12900401 EMSA \N UUAUUUAUUUAUUUAUUUAUUUAUUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 732 12900401 EMSA \N AUUUUUUUUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 733 12900401 EMSA \N UUUUAUUUAUUUU \N \N \N \N \N \N \N \N \N \N \N \N 734 12900401 EMSA \N UUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 735 12900401 SELEX 4 rounds of selection (U)(n) 12900401_HuR_4rounds.txt \N \N \N \N \N \N 0 \N \N \N \N 736 12900401 SELEX 5 rounds of selection (U)(n) 12900401_HuR_5rounds.txt \N \N \N \N \N \N 0 \N \N \N \N 737 12384599 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 738 11741601 EMSA \N GGACCAAAUGAAUGAUAUAACAUUUUGUUUUAUAAUGUUUGCUUUAUUUUUGGUUAACUUUUUCUUAUGGCUGCACAAGUACAACCUCUCGUGACUAUAAUGAAUUGGGUGCAUUUCCAUA \N \N \N \N \N \N \N \N \N \N \N \N 739 12196519 EMSA \N CAAGCUGGUCUCUGUUGGAUUCCCGUGGAUUAAUUCCAUUUUAUUUUAAGGCCAAGUGCAGGUGUCGUCCAUCACCCU \N \N \N \N \N \N \N \N \N \N \N \N 740 12234802 EMSA \N GAGAAUUCUACAUACUAAAUCUCUCUCCUUUUUUAAUUUUAAUAUUUG \N \N \N \N \N \N \N \N \N \N \N \N 741 12234802 EMSA \N UUUUUUAAUUUUAAUAUUUG \N \N \N \N \N \N \N \N \N \N \N \N 742 12234802 EMSA \N UUUUUUAAUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 743 12234802 EMSA \N GAGAAUUCUACAUACUAAAUCUCUCUCCUUUUUUAAUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 744 12234802 EMSA \N GAGAAUUCUACAUACUAAAUCUCUCUCCUUUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 745 12234802 EMSA \N UCGCGUAAUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 746 12234802 EMSA \N UUUUUUAAUCGUA \N \N \N \N \N \N \N \N \N \N \N \N 747 12242302 EMSA \N UUUUAUUGUGUUUUUAAUUUAUUUAUUAAGAUGGAUUCUCAGAUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 748 12242302 EMSA \N UAUUUUUAUUUUUAUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 749 11172920 UV cross-linking \N AUAUUUUUAUAUUUUUAUACUUUUUAUACUU \N \N \N \N \N \N \N \N \N \N \N \N 750 11172920 UV cross-linking \N AUAUUUAUUAGUAGAUUAUUUAUUAUAAUAUUUUUAUAUUUUUAUACUUUUUAUACUU \N \N \N \N \N \N \N \N \N \N \N \N 751 11172920 UV cross-linking \N AUACCUAUUAGUAGAUUACCUAUUAUAAUAUUUUUAUAUUUUUAUACUUUUUAUACUU \N \N \N \N \N \N \N \N \N \N \N \N 752 11172920 UV cross-linking \N AUAUUUAUUAGUAGAUUAUUUAUUAUAAUAUUUUUCUCUUUUUCUCCUUUUUCUCCUU \N \N \N \N \N \N \N \N \N \N \N \N 753 10734193 NMR \N AUUUA \N \N \N \N \N \N \N \N \N \N \N \N 754 10734193 NMR \N UAUUUAUUUU \N \N \N \N \N \N \N \N \N \N \N \N 755 10734193 NMR \N AUUUAUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 756 11602610 UV cross-linking \N UAUUUAUAUUUUUAUUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 757 11602610 UV cross-linking \N UAUUUCUUGUUUGUUUGUUUGGGUAU \N \N \N \N \N \N \N \N \N \N \N \N 758 11602610 UV cross-linking \N UUACCAUCUUUUUUUUUCUUUA \N \N \N \N \N \N \N \N \N \N \N \N 759 11602610 UV cross-linking \N UAUUUAUUUAAAUAUUUAAAUUUUAUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 760 11602610 UV cross-linking \N UAUUUAUUUAUGUAUUUAUGUAUUUAUUUAUUUAU \N \N \N \N \N \N \N \N \N \N \N \N 761 11602610 UV cross-linking \N UAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 762 11602610 UV cross-linking \N AUUUAUUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 763 11602610 UV cross-linking \N UUUUUUUUUUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 764 10848602 EMSA \N GGGAGACCCAAGCUUAUUUAUUUAUUUAUUGCAGGUCG \N \N \N \N \N \N \N \N \N \N \N \N 765 10913178 EMSA \N UAGGGGCGCUUUGUUUUGUUCGGUUUUGUUUUUUUGAGAG \N \N \N \N \N \N \N \N \N \N \N \N 766 11121017 genome-wide in vivo immunoprecipitation RIP-chip \N \N \N \N \N \N \N \N \N \N \N \N \N 767 11154260 EMSA \N UCUAUUUAUGUUUGCACUUGUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUACAGAUGAAUGUAUUUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 768 8668530 SELEX \N AUUUG(U)(7-11); GAAA 8668530_ELAVL2.txt \N \N \N \N \N \N \N \N \N \N \N 769 9016658 SELEX \N R(U)(2-5)(R)(1-2)(U)(2-5)R 9016658_Elavl3_1.txt \N \N \N \N \N \N \N \N \N \N \N 770 9016658 SELEX \N R(U)(2-5)(R)(1-2)(U)(2-5)R 9016658_Elavl3_2.txt \N \N \N \N \N \N \N \N \N \N \N 771 9045688 filter binding assay \N GAUCCCAAGUCCAACAGUGUGGCUUAAACAUUUGUUUCUUGGUGUUGUUAUGGCGAGUUUUUGGUAAUGAUGAUGCAGUCAUCUUGGGAAAUUCUUGCACUGUACCCCGGUUUUUUGAUCUGGUGCGUGUGGCCCUGUGGGAGUCCACUUUCCUCUCUAUUUCUCUCUGUUCCAAGUGUGUGUGUGCAAUGUUCCGUUCUGAGGAGUCCAAAAUAUUAAGUGAAUUC \N \N \N \N \N \N \N \N \N \N \N \N 772 9155038 EMSA \N AUUUAUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 773 9155038 EMSA \N UUAUUUAUUGACCUUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 774 9155038 EMSA \N AUGUAUGUAUGUAUGUA \N \N \N \N \N \N \N \N \N \N \N \N 775 9155038 EMSA \N AUUUUAUUUUAUUUUA \N \N \N \N \N \N \N \N \N \N \N \N 776 9155038 UV cross-linking \N UUAUUUAUU \N \N \N \N \N \N \N \N \N \N \N \N 777 9882309 EMSA \N AUAUUUAUUAGUAGAUUAUUUAUUAUAUAUUUUUAUAUUUUUAUACUUUUUAUACUU \N \N \N \N \N \N \N \N \N \N \N \N 778 9685407 filter binding assay \N UCUUAAUUAUUAUUUGUGUUUUAAUUUAAACACCUCCUCAUG \N \N \N \N \N \N \N \N \N \N \N \N 779 10075998 EMSA \N GGGCGAAUUGGAGCUCUUUUACUUUGUUAUUUAUUAUUUUAUAUAGAGCUCCACCGCGGUGGCGGCCGGUCAGA \N \N \N \N \N \N \N \N \N \N \N \N 780 10436048 UV cross-linking \N GGCGCCAUCGUGGAUGGAGUCCGUGUGUGCCUGGAGAUUACCCUGGACACCUCUGCUUUUUUUUUUUUUACUUUAGCGGUUGCCUCCUAGG \N \N \N \N \N \N \N \N \N \N \N \N 781 10449789 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 782 8497264 SELEX \N MUYCUUUWUWUUY 8497264_ELAVL2.txt \N \N \N \N 8497264_ELAVL2_aligned.txt 8497264_ELAVL2_motif.txt 1 782_8497264_1344_ELAVL2_RRMx3_logo.png 782_8497264.pwm 782_8497264.pfm \N 783 7972035 SELEX \N RWUUUAUUUWR 7972035_ELAVL2_1.txt \N \N \N \N 7972035_ELAVL2_1_aligned.txt 7972035_ELAVL2_1_motif.txt 1 783_7972035_1344_ELAVL2_RRMx3_logo.png 783_7972035.pwm 783_7972035.pfm \N 784 7972035 SELEX \N RWUUUAUUUWR 7972035_ELAVL2_2.txt \N \N \N \N 7972035_ELAVL2_2_aligned.txt 7972035_ELAVL2_2_motif.txt 1 784_7972035_1344_ELAVL2_RRMx3_logo.png 784_7972035.pwm 784_7972035.pfm \N 785 8626712 filter binding assay \N AUAUUUAUAUUUUUAUUUUAUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 786 8626712 filter binding assay \N AUACGUAUAUUUUUAUUUUAUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 787 8626712 filter binding assay \N AUAUUUAUAUCGCUAUUUUAUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 788 8626712 filter binding assay \N AUAUUUAUAUUUUUAUGCUAUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 789 8626712 EMSA \N CUGGUUUUUUAUUUAUGUUUUAAACC \N \N \N \N \N \N \N \N \N \N \N \N 790 10094314 SELEX \N AGACKACGAY 10094314_SFRS7.txt \N \N \N \N 10094314_SFRS7_aligned_1.txt 10094314_SFRS7_motif_1.txt 2 790_10094314_1370_SFRS7_RRMx1.Znf_CCHCx1_logo.png 790_10094314.pwm 790_10094314.pfm \N 791 10094314 SELEX \N UGUUCSAGWU 10094314_SC35.txt \N \N \N \N 10094314_SC35_aligned_1.txt 10094314_SC35_motif_1.txt 5 791_10094314_1537_SFRS2_RRMx1_logo.png 791_10094314.pwm 791_10094314.pfm \N 792 11875052 UV cross-linking \N AAAGAAGGAAAAGAAGGAAAAGAAGGA \N \N \N \N \N \N \N \N \N \N \N \N 793 11875052 UV cross-linking \N GGUUUCAGACAAAAUCAAAAAGAAGGAAGGUGCUCACAUUCCUUAAAUUAAGGA \N \N \N \N \N \N \N \N \N \N \N \N 794 12024014 EMSA \N CUGGAUUAUUCAACUGAAUGCCUCACUCAGAGAAUGAA \N \N \N \N \N \N \N \N \N \N \N \N 795 16249178 EMSA \N AAGAGAUGGGCAAGGAGGUGGA \N \N \N \N \N \N \N \N \N \N \N \N 796 16249178 EMSA \N GAAAGUCUGAUUGAAGAGGAAGCCAGGCAGAAGAAGA \N \N \N \N \N \N \N \N \N \N \N \N 797 17548433 SELEX \N AGGAY 17548433_ SRp30c.txt \N \N \N \N 17548433_ SRp30c_aligned.txt 17548433_ SRp30c_motif.txt 1 797_17548433_1358_SFRS9_RRMx2_logo.png 797_17548433.pwm 797_17548433.pfm \N 799 18534987 EMSA \N ACAAAGGACGGCACAGGACA \N \N \N \N \N \N \N \N \N \N \N \N 800 18534987 EMSA \N UGAGUCGGAUCGCAGCUUGGAUGGCCAC \N \N \N \N \N \N \N \N \N \N \N \N 801 18534987 EMSA \N CCUAGAGCCUUGGAUCCAGGAGAACG \N \N \N \N \N \N \N \N \N \N \N \N 802 9111335 SELEX \N GRUCAACCNGGCGACMG 9111335_B52.txt \N 1 \N \N 9111335_B52_aligned.txt 9111335_B52_motif.txt 1 802_9111335_2204_B52_RRMx2_logo.png 802_9111335.pwm 802_9111335.pfm \N 803 12655012 SELEX non-randomized pool: RNA was derived from genomic sequence. List of genes matching sequences in paper \N \N \N \N \N \N \N \N \N \N \N \N \N 804 7664738 SELEX \N DCADCUUUA; AUCYNNA 7664738_RBP1.txt \N \N \N \N \N \N 0 \N \N \N \N 805 9710581 EMSA \N CUCCGCUCCUCUUCCAGGUAAGACUGAGG \N \N \N \N \N \N \N \N \N \N \N \N 806 9710581 EMSA \N CUCCGCUCCUCUUCCAGCUAAGACUGAGG \N \N \N \N \N \N \N \N \N \N \N \N 807 12600940 EMSA \N GGGAACAAAAGCUGGGUACCGGGCCCCCCCUCGA \N \N \N \N \N \N \N \N \N \N \N \N 808 19893608 EMSA \N AGGUAUUGGGCUUUGGCUGAGGGCUUUUUGUUGUUGUUGUUGUUGUU \N \N \N \N \N \N \N \N \N \N \N \N 809 19893608 EMSA \N ACCUAUUCCCCUUUCCCUCACCCCUUUUUGUUGUUGUUGUUGUUGUU \N \N \N \N \N \N \N \N \N \N \N \N 810 19893608 EMSA \N ACCUAUUCCCCUUUGGCUGAGGGCUUUUUGUUGUUGUUGUUGUUGUU \N \N \N \N \N \N \N \N \N \N \N \N 811 20548952 protein affinity purification biotinylated RNA AUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCUAUUCU \N \N \N \N \N \N \N \N \N \N \N \N 812 16854432 NMR \N UCCCCAA \N \N \N \N \N \N \N \N \N \N \N \N 813 17928403 UV cross-linking \N AGCCACCUCCCACCCCACCCCA \N \N \N \N \N \N \N \N \N \N \N \N 814 17928403 UV cross-linking \N CCCAGCCCUGUCCCCUGAAAAACUGA \N \N \N \N \N \N \N \N \N \N \N \N 815 17928403 UV cross-linking \N CCCAGAAAUGUCCCCUGAAAAACUGA \N \N \N \N \N \N \N \N \N \N \N \N 816 15351640 yeast three-hybrid screen PWM is matrix reported in paper; note tripartite motif (also see ExpIDs 1217 and 1218) CCAUC(N)(2-7)WCCCW(N)(7-18)UCAYC \N \N \N \N \N \N \N \N \N 816_15351640.pwm \N \N 817 11867641 protein affinity purification biotinylated RNA (C)(n) \N \N \N \N \N \N \N \N \N \N \N \N 818 11741984 yeast three-hybrid screen \N YYAUC(N)(2-5)CYACCM(N)(11-17)UCAY \N \N \N \N \N \N \N \N \N \N \N \N 819 9160751 protein affinity purification biotinylated RNA AGCUUCCCCACCCUCUUCCCCAAGCCCCACCCUCUUCCCCAAGAU \N \N \N \N \N \N \N \N \N \N \N \N 820 10523673 homopolymer binding assay poly(C) (C)(n) \N \N \N \N \N \N \N \N \N \N \N \N 821 19285943 UV cross-linking \N GUGUGGUGAUGGGCCUGCAGAGGUGAGCUGGCCGGUGUCUCUC \N \N \N \N \N \N \N \N \N \N \N \N 822 8454877 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 823 7933083 EMSA \N GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCC \N \N \N \N \N \N \N \N \N \N \N \N 824 9409781 EMSA \N ACCUCGCUUAGGACUCCCAUUCCCAUGGAGAAACUCCUAGAUGAGGU \N \N \N \N \N \N \N \N \N \N \N \N 825 9409781 EMSA \N ACCUCGUCUAGGACUCCCAUUCCCAUGGAGAAACUCCUAGAUGAGGU \N \N \N \N \N \N \N \N \N \N \N \N 826 9409781 EMSA \N UGGAGUAGUAGGACUCCCAUUCCCAUGGAGAAACUCCUAGAUGAGGU \N \N \N \N \N \N \N \N \N \N \N \N 827 11342556 EMSA \N UGCUGUUUU \N \N \N \N \N \N \N \N \N \N \N \N 828 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUUU \N \N \N \N \N \N \N \N \N \N \N \N 829 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAUUU \N \N \N \N \N \N \N \N \N \N \N \N 830 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAAGCUUU \N \N \N \N \N \N \N \N \N \N \N \N 831 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAAGCAGGGUUU \N \N \N \N \N \N \N \N \N \N \N \N 832 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGAGC \N \N \N \N \N \N \N \N \N \N \N \N 833 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAAGC \N \N \N \N \N \N \N \N \N \N \N \N 834 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAAGCAGC \N \N \N \N \N \N \N \N \N \N \N \N 835 11580243 EMSA \N GGGCCAGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAAGCAGGGAGC \N \N \N \N \N \N \N \N \N \N \N \N 836 18836485 genome-wide in vivo immunoprecipitation RIP-chip \N \N see supplementary ino \N \N \N \N \N \N \N \N \N Exp836.zip 837 18515547 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 838 18515547 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 839 10037720 SELEX full length protein; Ns in motif are paired UUACNNNNNGURGWNNNNN 10037720_mod_full.txt \N 1 \N \N \N \N 0 \N \N \N \N 840 10037720 SELEX concatenated RRMs only; Ns in motif are paired UUACNNNNNGURGWNNNNN 10037720_mod_RRMs.txt \N 1 \N \N \N \N 0 \N \N \N \N 841 14532129 EMSA \N UUUUUUUGAGCAUGAAUUUUUUUGAGCACGUGAACCUAGGAUUAAG \N \N \N \N \N \N \N \N \N \N \N \N 842 14532129 EMSA \N CUCUCUCGAGCAUGAAUUUUUUUGAGCACGUGAACCUAGGAUUAAG \N \N \N \N \N \N \N \N \N \N \N \N 843 14532129 EMSA \N UUUUUUUGCUCUCUCAUUUUUUUGCUCUCUCUCUCUCUCUCUCUCU \N \N \N \N \N \N \N \N \N \N \N \N 844 12554879 UV cross-linking \N GCCAUCUUUUUGUUGUUUUUUUUCUAGC \N \N \N \N \N \N \N \N \N \N \N \N 845 12554879 UV cross-linking \N CUUAUCCUGUCCCUUUUUUUUCCACAGC \N \N \N \N \N \N \N \N \N \N \N \N 846 12554879 UV cross-linking \N GACUAACCGCACACUCUUUUCACAUAGC \N \N \N \N \N \N \N \N \N \N \N \N 847 12554879 filter binding assay \N GCCAUCUUUUUGUUGUUUUUUUUCUAGC \N \N \N \N \N \N \N \N \N \N \N \N 848 10617208 UV cross-linking \N UUUUUUUUUUUUUUUUAUAGUGAUAACGAAGCCACAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 849 8982872 UV cross-linking \N UCUUUUUGUUGUUUUUUUUCUAGUG \N \N \N \N \N \N \N \N \N \N \N \N 850 9268369 SELEX \N (U)(n) 9268369_sxl.txt \N \N \N \N \N \N 0 \N \N \N \N 851 7524034 SELEX \N A(U)(n)(N)(n)AGU 7524034_sxl.txt \N \N \N \N \N \N 0 \N \N \N \N 852 7556096 EMSA \N UUUUGUUGUUUUUUUUCUAG \N \N \N \N \N \N \N \N \N \N \N \N 853 7556096 EMSA \N CCUGUCCCUUUUUUUUCCACAG \N \N \N \N \N \N \N \N \N \N \N \N 854 7556096 EMSA \N GAGCUAACCCAUUUUUUCUUUUGCUUAGC \N \N \N \N \N \N \N \N \N \N \N \N 855 18267074 UV cross-linking \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUUUAAUGUUUUACUGGUUUUAAUAAAGC \N \N \N \N \N \N \N \N \N \N \N \N 856 18267074 UV cross-linking \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUGGGAUGUUGGACUGGUUGGAAUAAAGC \N \N \N \N \N \N \N \N \N \N \N \N 857 18267074 UV cross-linking \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUUUAAUGUUGGACUGGUUGGAAUAAAGC \N \N \N \N \N \N \N \N \N \N \N \N 858 18267074 UV cross-linking \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUGGGAUGUUUUACUGGUUGGAAUAAAGC \N \N \N \N \N \N \N \N \N \N \N \N 859 18267074 UV cross-linking \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUGGGAUGUUGGACUGGUUUUAAUAAAGC \N \N \N \N \N \N \N \N \N \N \N \N 860 18267074 UV cross-linking \N UGUUGGCACCAUGGGCUUCUCGAAAUAGUGUAUUGUGUUUUUAAUGUUUUACUGGUUUUAAUAAGC \N \N \N \N \N \N \N \N \N \N \N \N 861 18267074 UV cross-linking \N UGUUGGCACCAUGGGCUUCUCGAAAUAGUGUAUUGUGUUUUUAAUGUUGGACUGGUUGGAAUAAGC \N \N \N \N \N \N \N \N \N \N \N \N 862 18267074 UV cross-linking \N GGACACUUGUUAUAUUGUAGAACAUUUUUAACCAAUGCUCUUACUGUGUAUUUUAUUAUUUUAAUAA \N \N \N \N \N \N \N \N \N \N \N \N 863 18267074 UV cross-linking \N GGUCUAUGAACAAAAUGCCUCCUGAGCACUUUUAUCACUUUGCUUGAAUAUGCAAAAUGCACUUCUUGUAAAUAACUUUUUAAGUAGUCGCUGGUUUAAAGUUUUACUAUGACCUAAUCAAUGAUUUUGUAAUAAA \N \N \N \N \N \N \N \N \N \N \N \N 864 17024188 SELEX \N \N 17024188_CPEB4.txt \N 1 \N \N \N \N 0 \N \N \N \N 865 9447964 EMSA \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUUUAAUGUUUUACUGGUUUUAAUAAAGCUCAUUUUAACAUG \N \N \N \N \N \N \N \N \N \N \N \N 866 9447964 EMSA \N UGUUGGCACCAUGUGCUUCUGUAAAUAGUGUAUUGUGUUUUUAAUGUUUUACUGGUUGGAAUAAAGCG \N \N \N \N \N \N \N \N \N \N \N \N 867 18483487 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 868 9512528 SELEX \N (S)(n) 9512528_clp.txt \N \N \N \N \N \N \N \N \N \N \N 870 9804767 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 871 9804767 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 872 10325428 SELEX \N YAWCGACRR; AAWCGCGYR; 10325428_rsf1.txt \N \N 1 image of sequences too low resolution to transcribe accurately 10325428_rsf1_aligned_1.txt 10325428_rsf1_motif_1.txt 2 872_10325428_2224_Rsf1_RRMx1_logo.png 872_10325428.pwm 872_10325428.pfm \N 873 9182766 UV cross-linking \N UACUAAC \N \N \N \N \N \N \N \N \N \N \N \N 874 9182766 EMSA \N CAGUAUACUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 875 9182766 EMSA \N CAGUAUACUAACAACUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 876 9182766 EMSA \N CAGUAUACUAACGAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 877 9182766 EMSA \N CAGUAUACUAACAGGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 878 9182766 EMSA \N CAGUGUACUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 879 9182766 EMSA \N CAGGAUACUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 880 9182766 EMSA \N CAGUAUACUAACAAGGUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 881 9182766 EMSA \N CAGUAUGCUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 882 9182766 EMSA \N CAGUAGACUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 883 9182766 EMSA \N CAGUAUACUGACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 884 9182766 EMSA \N CAGUAUACUAAGAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 885 9182766 EMSA \N CAGUAUAGUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 886 9512519 EMSA \N UUCGUGCUGACCCUGUCCCUUUUUUUUCCACAGC \N \N \N \N \N \N \N \N \N \N \N \N 887 9701290 EMSA \N CAGUAUACUAACAAGUUGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 888 9701290 EMSA \N UAUACUAACAA \N \N \N \N \N \N \N \N \N \N \N \N 889 11691992 EMSA \N UAUACUAACAA \N \N \N \N \N \N \N \N \N \N \N \N 890 19458619 EMSA \N UUAGGGUCACACCCACCACUGGGAGAU \N \N \N \N \N \N \N \N \N \N \N \N 891 19458619 EMSA \N UUAGGGUCACACCCACCACUCCCAGAU \N \N \N \N \N \N \N \N \N \N \N \N 892 17908789 EMSA \N CUAUUUAUUAUUUAUGUAUUUAUUUAAGC \N \N \N \N \N \N \N \N \N \N \N \N 893 17908789 genome-wide in vivo immunoprecipitation RNA pulldown with strep-tagged protein + microarray \N \N table of genes in paper \N \N \N \N \N \N \N \N \N Exp893.zip 894 18583400 UV cross-linking \N GUCUCUUCCAAUGAUUCCAUUUCAAUAUAUUCUUCUUUUUAAAGUAUUACACAUUUCCACUUCUCUCCUUAAAUAUAAAUAAGUUUAAUGAUCAUGAA \N \N \N \N \N \N \N \N \N \N \N \N 895 16428607 EMSA \N GGGAGACCGGAAGCUUGGGCUGCAGUUUAAGUAUAGGUUAAGAAAAUAUAUAAUGGGCGAGCUCGAAUU \N \N \N \N \N \N \N \N \N \N \N \N 896 16428607 EMSA \N GAAUACACGGAAUUCGAGCUCGCCCGGGGAUCCUCUAGAGUCGACCUGCAGCCCAAGCU \N \N \N \N \N \N \N \N \N \N \N \N 897 16428607 EMSA \N UUUAAGUAUAGGUUAAGAAAAUAUAUAAU \N \N \N \N \N \N \N \N \N \N \N \N 898 16428607 EMSA \N UAAGUAUAGGUUAAGAAAAU \N \N \N \N \N \N \N \N \N \N \N \N 899 16126846 UV cross-linking \N GAUGGAGAUAUUUACAUGAAUUGCAUUUUACUUUAAUC \N \N \N \N \N \N \N \N \N \N \N \N 900 16126846 UV cross-linking \N GAUGGAGAUGGGCCCAUGAAUUGCAUUUUACUUUAAUC \N \N \N \N \N \N \N \N \N \N \N \N 901 16364914 UV cross-linking \N UCACAUAAGGCUAACACCCAGCCCAGCGAGGGAAUUUAGCUGACUCCUUAAAGCAGAGAGCAUCCUCUUCUGAGGAGAGAAAGAUGGAGUCCAGAGAGCCCCCUUGUUAAUGUCCCUCAGUGGGGCAAACUCAGGAGCUUCUUUUUUGUUUAUCAUAAUAUGCCUCGAAUUCC \N \N \N \N \N \N \N \N \N \N \N \N 902 12415010 protein affinity purification biotinylated RNA GCGGACUGUUACUGAGCUGCGUUUUACACCCUU \N \N \N \N \N \N \N \N \N \N \N \N 903 12415010 protein affinity purification biotinylated RNA CUUUGACAAAACCUAACUUGC \N \N \N \N \N \N \N \N \N \N \N \N 904 12415010 protein affinity purification biotinylated RNA GCCAAGGAGCC \N \N \N \N \N \N \N \N \N \N \N \N 905 12415010 protein affinity purification biotinylated RNA GUUUAUAAUUUUUUUAUUACUG \N \N \N \N \N \N \N \N \N \N \N \N 906 17437629 genome-wide in vivo immunoprecipitation RNA pulldown with GST-tagged protein + microarray UAUUUAUw; UwUAUUUw; nUGUrUrU; CnsCyUCC \N table of transcripts in paper \N \N \N \N \N \N \N \N \N Exp906.zip 907 18684992 NMR KH1; scaffold-independent analysis UGGG \N \N \N \N \N \N \N \N \N \N \N \N 908 18684992 NMR KH2; scaffold-independent analysis UUAG \N \N \N \N \N \N \N \N \N \N \N \N 909 18684992 NMR KH3; scaffold-independent analysis GGGU \N \N \N \N \N \N \N \N \N \N \N \N 910 18684992 NMR KH4; scaffold-independent analysis AGGG \N \N \N \N \N \N \N \N \N \N \N \N 911 18684992 NMR KH3 UAGUAU \N \N \N \N \N \N \N \N \N \N \N \N 912 18684992 NMR KH3 UAGGUU \N \N \N \N \N \N \N \N \N \N \N \N 913 18684992 NMR KH3 UGGGU \N \N \N \N \N \N \N \N \N \N \N \N 914 18684992 NMR KH3 UAUUAU \N \N \N \N \N \N \N \N \N \N \N \N 915 11565747 SELEX \N RCYYCUURYRC 11565747_Psi.txt \N \N \N \N 11565747_Psi_aligned.txt 11565747_Psi_motif.txt 1 915_11565747_2232_Psi_KHx4_logo.png 915_11565747.pwm 915_11565747.pfm \N 916 11719186 UV cross-linking \N UUUUAUUGUGUUUUUAAUUUAUUUAUUAGAUGGAUUCUCAGAUAUUUAUAUUUUUAUUUUAUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 917 12024024 EMSA \N GGAGGAGACUGAGUCGCUGAUUACUCUGUACUCCGGUCCUGUCUGGUGCGACAACACUUACCAGGCAGGAUC \N \N \N 1 experiment performed with protein complex \N \N \N \N \N \N \N 918 12024024 EMSA \N AGAAACAGCACAUGAUGAAUGGAGGAGACUGAGUCGCUGAUUACUCUGUACUCCG \N \N \N 1 experiment performed with protein complex \N \N \N \N \N \N \N 919 19917293 EMSA \N CCACAAAGAGUCUACAUGUCUAGGGUCUAGACAUGUUCAGCUUUGUGG \N \N 1 \N \N \N \N \N \N \N \N \N 920 19917293 EMSA \N AUCGUGCAAGUCUACAUGUCUAGGGUCUAGACAUGUUCAGUGCACGAU \N \N 1 \N \N \N \N \N \N \N \N \N 921 19917293 EMSA \N CCACAAAGAGUCUGCUAGACUUCGGUGAAGUCUAGCUCAGCUUUGUGG \N \N 1 \N \N \N \N \N \N \N \N \N 958 18258190 single RNA affinity purification \N AAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 957 8977107 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 922 19282290 SELEX \N CCM 19282290_hnRNPG.txt \N \N \N \N 19282290_hnRNPG_aligned.txt 19282290_hnRNPG_motif.txt 1 922_19282290_1487_RBMX_RRMx1_logo.png 922_19282290.pwm 922_19282290.pfm \N 923 11470789 UV cross-linking \N UGUGUGUGUGUG \N \N \N \N \N \N \N \N \N \N \N \N 924 15826655 EMSA \N GUGUGUGUAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 925 15826655 EMSA \N GUGUGUGUGUAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 926 15826655 EMSA \N AGUGUGUGUGUGU \N \N \N \N \N \N \N \N \N \N \N \N 927 16157593 EMSA \N UGUGUGUGUGUGUGUGUGUGUGUG \N \N \N \N \N \N \N \N \N \N \N \N 928 16157593 EMSA \N UAGGGWUAGGGWUAGGGW \N \N \N \N \N \N \N \N \N \N \N \N 929 16157593 EMSA \N UUUUUUUUUUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 930 16254078 protein affinity purification adipic dehydrazide bead-bound RNA AUACCUUUUUGGGGAGGGGGCAGAGAGC \N \N \N \N \N \N \N \N \N \N \N \N 931 19174564 filter binding assay \N UGUGUGUGUGUG \N \N \N \N \N \N \N \N \N \N \N \N 932 19174564 filter binding assay \N UGUGUGUGUGUGUGUG \N \N \N \N \N \N \N \N \N \N \N \N 933 19429692 EMSA \N UGUGUGUGUGUGA \N \N \N \N \N \N \N \N \N \N \N \N 934 20423455 EMSA \N UGAGGUAGUAGGUUGUGUGGUU \N \N \N \N \N \N \N \N \N \N \N \N 935 20423455 EMSA \N UGAGGUAGUAGGUUGUGUAGUU \N \N \N \N \N \N \N \N \N \N \N \N 936 9632784 SELEX non-randomized pool: RNA sequences were mutated variants of Xenopus vitellogenin B1 3' UTR \N \N \N \N \N \N \N \N \N \N \N \N \N 955 1826042 single RNA affinity purification GST-tag ACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGGUGCACC \N \N 1 \N \N \N \N \N \N \N \N \N 956 8977107 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 937 17137791 UV cross-linking \N GGGAGGCGGCAGUGUGAGUACCUUCACACGUCCCAUGCGCCGU \N \N \N \N \N \N \N \N \N \N \N \N 939 17137791 UV cross-linking \N GGGAGGCGGCAGUGUUCACACGUCCCAUGCGCCGU \N \N \N \N \N \N \N \N \N \N \N \N 940 17137791 UV cross-linking \N GGGAGGCGGCAGUGUGAGUACCUUCACACGUCCGU \N \N \N \N \N \N \N \N \N \N \N \N 941 17137791 UV cross-linking \N GGGAGGCGGCAGUGUGAGUACCUUCACACGUCCCAU \N \N \N \N \N \N \N \N \N \N \N \N 942 11096110 UV cross-linking \N CUAGACACAUUCUCGAUCCAGAGGAAGGCGAUACG \N \N \N \N \N \N \N \N \N \N \N \N 943 11096110 UV cross-linking \N CUAGCUCACGCGCAGGAGCAGGGGACGAAG \N \N \N \N \N \N \N \N \N \N \N \N 944 11336712 UV cross-linking \N ACAACAAGAAGACGCGCAUCAUACAACAAGAAGACGCGCAUCAUACAACAAGAAGACGCGCAUCAUACAACAAGAAGACGCGCAUCAU \N \N \N \N \N \N \N \N \N \N \N \N 945 11336712 UV cross-linking \N ACAACAACUAGCCACGGAUCAUACAACAACUAGCCACGGAUCAUACAACAACUAGCCACGGAUCAUACAACAACUAGCCACGGAUCAU \N \N \N \N \N \N \N \N \N \N \N \N 946 10094314 SELEX \N GWUWCCUGCUA 10094314_SC35.txt \N \N \N \N 10094314_SC35_aligned_2.txt 10094314_SC35_motif_2.txt 5 946_10094314_1274_SNRPA_RRMx2_logo.png 946_10094314.pwm 946_10094314.pfm \N 954 10094314 SELEX \N ACGAGAGAY 10094314_SFRS7.txt \N \N \N \N 10094314_SFRS7_aligned_2.txt 10094314_SFRS7_motif_2.txt 2 954_10094314_1370_SFRS7_RRMx1.Znf_CCHCx1_logo.png 954_10094314.pwm 954_10094314.pfm \N 947 10094314 SELEX \N GGGUAUGCUG 10094314_SC35.txt \N \N \N \N 10094314_SC35_aligned_3.txt 10094314_SC35_motif_3.txt 5 947_10094314_1274_SNRPA_RRMx2_logo.png 947_10094314.pwm 947_10094314.pfm \N 948 10094314 SELEX \N GAGCAGUAGKS 10094314_SC35.txt \N \N \N \N 10094314_SC35_aligned_4.txt 10094314_SC35_motif_4.txt 5 948_10094314_1274_SNRPA_RRMx2_logo.png 948_10094314.pwm 948_10094314.pfm \N 952 7543047 SELEX SF2dRS AGGACAGAGC 7543047_SF2dRS.txt \N \N \N \N 7543047_SF2dRS_aligned_2.txt 7543047_SF2dRS_motif_2.txt 2 952_7543047_1448_SFRS1_RRMx2_logo.png 952_7543047.pwm 952_7543047.pfm \N 949 10094314 SELEX \N AGGAGAU 10094314_SC35.txt \N \N \N \N 10094314_SC35_aligned_5.txt 10094314_SC35_motif_5.txt 5 949_10094314_1274_SNRPA_RRMx2_logo.png 949_10094314.pwm 949_10094314.pfm \N 950 7908267 SELEX ACDAAYM ENSG00000070756_7908267.txt \N \N \N \N ENSG00000070756_7908267_aligned.txt ENSG00000070756_7908267_motif_2.txt 2 950_7908267_1262_PABPC1_RRMx4_logo.png 950_7908267.pwm 950_7908267.pfm \N 959 18258190 single RNA affinity purification \N UUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 960 18258190 single RNA affinity purification \N WWWWWW \N \N \N \N \N \N \N \N \N \N \N \N 961 18258190 single RNA affinity purification \N AAUAAA \N \N \N \N \N \N \N \N \N \N \N \N 962 20460131 NMR \N AAUAAA \N \N \N \N \N \N \N \N \N \N \N \N 963 11006293 RNA footprinting \N AUACUUACCUGGCACGGGAGAUACCAUGAUCACGAAGGUGGUUUCCC \N \N 1 \N \N \N \N \N \N \N \N \N 964 18303858 NMR \N GGUCUCUCUG \N \N \N \N \N \N \N \N \N \N \N \N 965 18303858 NMR \N CUCUGGUUAG \N \N \N \N \N \N \N \N \N \N \N \N 966 18303858 NMR \N UCUGGCUAAC \N \N \N \N \N \N \N \N \N \N \N \N 967 16898873 NMR \N GGUCUCUCUGGUUAGACC \N \N \N \N \N \N \N \N \N \N \N \N 968 16898873 NMR \N GGCUAACUAGGGAACC \N \N \N \N \N \N \N \N \N \N \N \N 969 20167602 SELEX \N KVVURC 20167602_YTHDC1.txt \N \N \N \N 20167602_YTHDC1_aligned.txt 20167602_YTHDC1_motif.txt 1 969_20167602_1283_YTHDC1_YTHx1_logo.png 969_20167602.pwm 969_20167602.pfm \N 970 20167602 EMSA \N GCAUGC \N \N \N \N \N \N \N \N \N \N \N \N 971 12654270 single RNA affinity purification \N GGAGAGGACACACUCUGCACCCCCCCACCCCACGACCUUGGCCCGAGCCCCUCCGUGACCAACACAAG \N \N 1 \N \N \N \N \N \N \N \N \N 972 17154535 single RNA affinity purification \N AUAUAUAU \N \N \N \N \N \N \N \N \N \N \N \N 973 19470752 protein affinity purification biotinylated RNA CUCCCAAAAAGGCUCUUUCAGAGCCACCCACUGAAUCAGAUAAACACUUCUCUCACGGUAG \N \N 1 \N \N \N \N \N \N \N \N \N 978 9710584 EMSA \N ACGGAUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUAUGACCUCAAUGAGGUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGG \N \N 1 \N \N \N \N \N \N \N \N \N 975 19470752 protein affinity purification biotinylated RNA CUGAAUCAGAUAAACACUUCUCUCACGGUAG \N \N \N \N \N \N \N \N \N \N \N \N 979 18001138 EMSA \N UUUUUUUUUUUUUUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 980 18083836 UV cross-linking \N (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 977 19470752 EMSA biotinylated RNA CUCCCAAAAAGGCUCUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 981 18083836 UV cross-linking \N (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 983 9037021 SELEX 7 rounds of selection UGGGAGCRGUYRGCUCGY 9037021_SRp40_7rounds.txt \N 1 \N \N \N \N \N \N \N \N \N 984 9037021 SELEX 6 rounds of selection UGGGAGCRGUYRGCUCGY 9037021_SRp40_6rounds.txt \N 1 \N \N \N \N \N \N \N \N \N 985 9037021 SELEX 5 rounds of selection UGGGAGCRGUYRGCUCGY 9037021_SRp40_5rounds.txt \N 1 \N \N \N \N \N \N \N \N \N 986 9199345 UV cross-linking \N AGCUUGCGGCAGGAGAAGG \N \N \N \N \N \N \N \N \N \N \N \N 987 16990281 EMSA \N UUACUCAACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCCUAGACUAGAGCCCUGG \N \N \N \N \N \N \N \N \N \N \N \N 988 16990281 EMSA \N UUACUCAACAAGCAAGAAAUGGAGCCAGUAGAUCCUAGACUAGAGCCCUGG \N \N \N \N \N \N \N \N \N \N \N \N 989 16990281 EMSA \N UUACUCAACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCG \N \N \N \N \N \N \N \N \N \N \N \N 990 16990281 EMSA \N UUACUCAACAGAGGAGAGCAAGAAAUGGAGCCAAUCGAUCCUAGACUAGAGCCCUGG \N \N \N \N \N \N \N \N \N \N \N \N 991 16990281 NMR \N GGCGUAGACUGAGCCCUGGAAGCAUCCAGGAAGUCAGCCUAACGCC \N \N 1 \N \N \N \N \N \N \N \N \N 992 18945760 protein affinity purification biotinylated RNA CUGCACCACCACCUAUCUATT \N \N \N \N \N \N \N \N \N \N \N \N 993 18945760 protein affinity purification biotinylated RNA CUGCACCACCACCUGGUUCTT \N \N \N \N \N \N \N \N \N \N \N \N 994 18945760 protein affinity purification biotinylated RNA GGCAGGAAGAAGAGGAGCATT \N \N \N \N \N \N \N \N \N \N \N \N 995 18945760 protein affinity purification biotinylated RNA CCAGACACCGGAAACCCCUGCCACACCAC \N \N \N \N \N \N \N \N \N \N \N \N 996 20639886 genome-wide in vivo immunoprecipitation RIP-chip \N \N E-MEXP-2637; E-MEXP-2640 \N \N \N \N \N \N \N \N \N Exp996.zip 997 20385601 EMSA \N UGGAGCCUUCCACCCCGGCACUCAUGACGGUCUGCCUGAAAACCAGCCCGCUGGUGGGGCAGUCCCGAGGACCUGGCGUGCAUCCCCGCCGGAGGAAGGUCC \N \N 1 \N \N \N \N \N \N \N \N \N 998 18381443 EMSA \N CCAAAGGGAAAUAUCAUUUAUUUUUUACA \N \N \N \N \N \N \N \N \N \N \N \N 999 17320986 EMSA \N CCUGCACUCUGCGUCCCGCACCCCAGCAGCCGCGCCAUGAGCCGUGAGUGCGACCCCGGUGCCCGGUGGGGAAUUUUCUUGGCCUCCUGGUGGAGCCUUGAAUGCCAGGCUCAGCCCCUCAUCUCUCUCCUCUG \N \N 1 \N \N \N \N \N \N \N \N \N 1000 16153722 EMSA \N AGGGCUCCCGUCCUGCUUUGCAGUGCCAUGUAAAUCCCCACUGGGACCAACCCUGGGGAAGGAGCCAGUUUGCCGGAUACAAACUGGUAUUCUGUUCUGGAGGAAAGGGAGGAGUGGAGGUGGGCUGGGCCCUCUCUUCUCACCUUUGUUUUUUGUUGGAGUGUUUCUAAUAAACUUGGAUUC \N \N \N \N \N \N \N \N \N \N \N \N 1001 14602904 fluorescence methods fluorescence anisotrophy GGACACGAAAUCCCGAAUGAGUGUCC \N \N \N \N \N \N \N \N \N \N \N \N 1002 14602904 fluorescence methods fluorescence anisotrophy GGAUGGAGUCCCGAACCUCCGUCC \N \N \N \N \N \N \N \N \N \N \N \N 1003 14602904 fluorescence methods fluorescence anisotrophy GGAUGCCUCCCGAGUGCAUCC \N \N \N \N \N \N \N \N \N \N \N \N 1004 8676391 SELEX \N CCGAAAKCCCGAAGYAGG 8676391_NCL.txt \N 1 \N \N 8676391_NCL_aligned.txt 8676391_NCL_motif.txt 1 1004_8676391_1367_NCL_RRMx4_logo.png 1004_8676391.pwm 1004_8676391.pfm \N 1005 8676391 filter binding assay \N UCUCUUGGAGUCCCGAACCUCCGCUC \N 1 \N \N \N \N \N \N \N \N \N 1006 8676391 filter binding assay \N UCCACAUGCCUCCCGAGUGCAUUUCU \N 1 \N \N \N \N \N \N \N \N \N 1007 8676391 filter binding assay \N CGUCCGAGCGUCCCGACUCCCGGUGC \N 1 \N \N \N \N \N \N \N \N \N 1008 8676391 filter binding assay \N UCUUUCUUCCACAUGCCUCCCGAGUGCAUUUCUUCUCUAGA \N 1 \N \N \N \N \N \N \N \N \N 1009 8676391 filter binding assay \N UCUUUCUUCCACAUGCCUCCCGGGUGCAUUUCUUCUCUAGA \N 1 \N \N \N \N \N \N \N \N \N 1010 8676391 filter binding assay \N UAAGUGCAACCGAAAUCCCGAAGUAGGUUGAUAUAA \N 1 \N \N \N \N \N \N \N \N \N 1011 8676391 filter binding assay \N UAAGUGCAAACGAAAUCCCGAAGUAGUUUGAUAUAA \N 1 \N \N \N \N \N \N \N \N \N 1012 8676391 filter binding assay \N UAAGUGCAACCGAAAUCCCGAAGUAGGAACAAUAUA \N 1 \N \N \N \N \N \N \N \N \N 1013 8676391 filter binding assay \N UAUAUUGUUCCGAAAUCCCGAAGUAGGUUGAUAUAA \N 1 \N \N \N \N \N \N \N \N \N 1014 8676391 filter binding assay \N UAUAUUGUUCCGAAAUCCCGAAGUAGGAACAAUAUA \N 1 \N \N \N \N \N \N \N \N \N 1015 14679209 EMSA \N CAGUCUUCAGGCAAAACGUCGAAUCAGCUAUUUACUGCCAAAGGGAAAUAUCAUUUAUUUUUUACAUUAUUAAGAAAAAAAGAUUUAUUUAUUUAAGACAGUCCCAUCAAAACUCCUGUCUUUGGAAAUCCGACCAC \N \N \N \N \N \N \N \N \N \N \N \N 1016 15033352 NMR \N UGCCUCCCGAGUGCA \N \N 1 \N \N \N \N \N \N \N \N \N 1017 15033352 EMSA \N UGGAGUCCCGAACCUCCG \N \N 1 \N \N \N \N \N \N \N \N \N 1018 15033352 EMSA \N UGCCUCCCGAGUGCA \N \N 1 \N \N \N \N \N \N \N \N \N 1019 15033352 EMSA \N GAGGAAAUCCCGAAGUACUC \N \N 1 \N \N \N \N \N \N \N \N \N 1020 15033352 EMSA \N GAGGAAAGCCCAAAGUACUC \N \N 1 \N \N \N \N \N \N \N \N \N 1021 15033352 EMSA \N GAGGAAAUCCCGAAGUCCUC \N \N 1 \N \N \N \N \N \N \N \N \N 1022 15170331 fluorescence methods fluorescence anisotrophy ACACGAAAUCCCGAAUGAGUGU \N \N 1 \N \N \N \N \N \N \N \N \N 1023 15170331 fluorescence methods fluorescence anisotrophy GGAUGCCUCCCGAGUGCAUCC \N \N 1 \N \N \N \N \N \N \N \N \N 1024 20571027 RNA footprinting \N GUCUUCAGGCAAAACGUCGAAUCAGCUAUUUACUGCCAAAGG \N \N 1 \N \N \N \N \N \N \N \N \N 1025 10817758 UV cross-linking \N AUCACUCUCUUUAAUCACUACUCACAGUAACCUCAACUCCUGCCACAAUGUACAGGAU \N \N \N \N \N \N \N \N \N \N \N \N 1026 10858445 SELEX sequences not reported that matched motif from PMID:8676391 AUUCGANCCGNG 10858445_NCL.txt \N \N \N \N 10858445_NCL_aligned.txt 10858445_NCL_motif.txt 1 1026_10858445_2563_NCL_RRMx4_logo.png 1026_10858445.pwm 1026_10858445.pfm \N 1027 11023788 NMR \N GGCCGAAAUCCCGAAGUAGGCC \N \N 1 \N \N \N \N \N \N \N \N \N 1028 11118222 NMR \N GGCCGAAAUCCCGAAGUAGGCC \N \N 1 \N \N \N \N \N \N \N \N \N 1029 11278842 UV cross-linking \N UCGCUCCCGUUGGAUCGAUGUGGUGCUGCCGCG \N \N \N \N \N \N \N \N \N \N \N \N 1030 11278842 UV cross-linking \N AUUGCGACCGGUUCUGCAAUACUCGAGGUUG \N \N \N \N \N \N \N \N \N \N \N \N 1031 11397095 NMR \N GGCCGAAAUCCCGAAGUAGGCC \N \N 1 \N \N \N \N \N \N \N \N \N 1032 12000845 EMSA \N GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCACUGCUUAAGCCUCAAUAAAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 1033 12000845 EMSA \N GAAUACACGGAAUUCGAGCUCGGUACCCGGGGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCACUGCUUAAGCCUCAAUAAAGCU \N \N 1 \N \N \N \N \N \N \N \N \N 1034 12000845 genome-wide in vivo immunoprecipitation immunotube selection + cloning \N table of gene names in paper 0 \N \N \N \N \N \N \N \N Exp1034.zip 1035 8915542 filter binding assay \N GGGAAUUCGCGGGCCUGCUGUUCUCCCGCGCGUCCGAGCGUCCCGACUCCCGGUGCCGGCCC \N \N 1 \N \N \N \N \N \N \N \N \N 1036 8915542 filter binding assay \N AUGCCUCCCGAGUGCAU \N \N 1 \N \N \N \N \N \N \N \N \N 1037 10359774 yeast three-hybrid assay \N AGCAAAAGCAGGGUAGAUAAUCACUCACUGAGUGACAUCAAAAUC \N \N 1 \N \N \N \N \N \N \N \N \N 1038 10359774 EMSA \N AGCAAAAGCAGGGUAGAUAAUCACUCACUGAGUGACAUCAAAAUCAUG \N \N \N \N \N \N \N \N \N \N \N \N 1039 10359774 EMSA \N AGCAAAAGCAGGGUAGAUAAUGUGACAUCAAAAUCAUG \N \N \N \N \N \N \N \N \N \N \N \N 1040 10359774 EMSA \N AGCAAAAAGCAGGGUGACAAAGACAUAAUG \N \N \N \N \N \N \N \N \N \N \N \N 1041 12239318 EMSA \N GGAGCAAAAGCAGGGUAGAUAAUCACUCACUGAGUGACAUCAAAAUCAUG \N \N \N \N \N \N \N \N \N \N \N \N 1042 12239318 EMSA \N GGAGCAAAAGCAGGGUAGAUAAUGUGACAUCAAAAUCAUG \N \N \N \N \N \N \N \N \N \N \N \N 1043 12239318 EMSA \N GGAGCAAAAGCAGGGU \N \N \N \N \N \N \N \N \N \N \N \N 1044 12239318 EMSA \N GGAAAAGCAGGGUAGAUAAUGUGACAUCAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1045 12239318 EMSA \N GGAGCAGGGUAGAUAAUGUGACAUCAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1046 12239318 EMSA \N GGAGGGUAGAUAAUGUGACAUCAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1047 12239318 EMSA \N GGAGCAAAAGCAGGGUGACAAAGACAUAAUG \N \N \N \N \N \N \N \N \N \N \N \N 1048 12239318 EMSA \N GGAGCGAAAGCAGGUAGAUAUUGAAAGAUG \N \N \N \N \N \N \N \N \N \N \N \N 1049 12239318 EMSA \N GGAGCGAAAGCAGGGGUUUAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1050 16630539 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1051 16872451 genome-wide in vivo immunoprecipitation RIP-chip \N \N not released \N \N \N \N \N \N \N \N \N \N 1052 17318228 SELEX 1 of 2 independent experiments CWCAA 17318228_RBMY.txt \N 1 \N \N 17318228_RBMY_aligned.txt 17318228_RBMY_motif.txt 1 1052_17318228_1720_RBMY1A1_RRMx1_logo.png 1052_17318228.pwm 1052_17318228.pfm \N 1053 17318228 SELEX 2 of 2 independent experiments CWCAA 17318228_RBMY_2.txt \N 1 \N \N 17318228_RBMY_2_aligned.txt 17318228_RBMY_2_motif.txt 1 1053_17318228_1720_RBMY1A1_RRMx1_logo.png 1053_17318228.pwm 1053_17318228.pfm \N 1054 18492746 genome-wide in vivo immunoprecipitation RNA pulldown with GST-tagged protein + differential display \N \N short list of genes in paper \N \N \N \N \N \N \N \N \N Exp1054.zip 1055 17785461 EMSA \N AAAAAAAAAAAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1056 15260483 NMR \N GGCCAAAGGCCCUUUUCAGGGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1057 16931877 genome-wide in vivo immunoprecipitation RIP-chip \N \N http://whitfieldlab.dartmouth.edu:16080/mRNP/ \N \N \N \N \N \N \N \N \N \N 1058 11214174 filter binding assay \N GGGCGAAUUGGAGCUCCCAAAAAGGCUCUUUUCAGAGCCACCCACUGAAUCAGAUAAAGAGUUGUGUCACGGUAGCCG \N \N \N \N \N \N \N \N \N \N \N \N 1059 11214174 filter binding assay \N CCAAAGGCUCUUUUCAGAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1064 11214174 filter binding assay \N CCAAAGGCUGUUUUCACAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1060 11214174 filter binding assay \N CCAAACGCUCUUUUCAGAGCGACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1061 11214174 filter binding assay \N CCAAAGGCACUUUUCUGAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1062 11214174 filter binding assay \N AAAGGCUCUUUUCAGAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1063 11214174 filter binding assay \N CCAAAGGCUCUUUUCAGAGCCACC \N \N \N \N \N \N \N \N \N \N \N \N 1065 11214174 filter binding assay \N CCAAAGGCUCUUUUCAGAGCCA \N \N \N \N \N \N \N \N \N \N \N \N 1066 11214174 filter binding assay \N AAAGGCUCUUUUCAGAGCCA \N \N \N \N \N \N \N \N \N \N \N \N 1067 11157774 EMSA \N CCAAAAAGGGUCUUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1068 11157774 protein affinity purification biotinylated RNA CCAAAAAGGGUCUUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1069 10710426 EMSA \N AAAAGGCCCUUUUCAGGGCCACCC \N \N 1 \N \N \N \N \N \N \N \N \N 1070 10710426 EMSA \N AAAAGGCCCUGUUCAGGGCCACCC \N \N 1 \N \N \N \N \N \N \N \N \N 1071 10710426 EMSA \N AAAAGGCCCUUUACAGGGCCACCC \N \N 1 \N \N \N \N \N \N \N \N \N 1072 10207079 EMSA \N AAAAAGGCCCUUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1073 10207079 EMSA \N AUUUGGGCCCUUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1074 10207079 EMSA \N AAAAAGGCCCUUUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1075 11884612 EMSA \N CCAAAGGCUCUUUUCAGAGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1076 11884612 EMSA \N CCAAAAGUCCUUUUCAGGGCUACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1077 11884612 EMSA \N CCAAACGUCCUUUUCAGGACGACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1078 11884612 EMSA \N CCAAAGGCCCUUUUCAGGGCCACCCA \N \N 1 \N \N \N \N \N \N \N \N \N 1079 11105754 EMSA \N GGACAAAAGGCCCUUUUCAGGGCCACCC \N \N 1 \N \N \N \N \N \N \N \N \N 1080 11105754 EMSA \N GGAACCCAACGGCCCUCUUUAGGGCCACAA \N \N 1 \N \N \N \N \N \N \N \N \N 1081 11105754 EMSA \N GGACAAAAGGCCCUCUUUAGGGCCACCC \N \N 1 \N \N \N \N \N \N \N \N \N 1082 11105754 EMSA \N GGAACCGAACCCAACGGCCCUCUUUAGGGCCACAA \N \N 1 \N \N \N \N \N \N \N \N \N 1083 11105754 EMSA \N GGAACCCGAACCCAACGGCCCUUUUCAGGGCCACAA \N \N 1 \N \N \N \N \N \N \N \N \N 1084 11105754 EMSA \N GGAACCCGAACCCAACGGCCCUUUUUAGGGCCACAA \N \N 1 \N \N \N \N \N \N \N \N \N 1085 11105754 EMSA \N GGAACCCGAACCCAACGGCCCUCUUCAGGGCCACAA \N \N 1 \N \N \N \N \N \N \N \N \N 1087 1834994 EMSA \N AAAAAGGCUCUUUUCAGAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1088 1834994 EMSA \N AAAAAGGCUCUUUUUCAGAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1089 1834994 EMSA \N AAAAAGGCUCUUUUUUCAGAGCCACCCA \N \N \N \N \N \N \N \N \N \N \N \N 1092 2410862 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUU \N \N 1 \N \N \N \N \N \N \N \N \N 1093 2494645 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUU \N \N 1 \N \N \N \N \N \N \N \N \N 1094 2494645 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUU \N \N 1 \N \N \N \N \N \N \N \N \N 1095 2494645 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUU \N \N 1 \N \N \N \N \N \N \N \N \N 1096 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1097 2001375 filter binding assay \N GCCUACGGCCACAGGACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1098 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGGCACAGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1099 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUCGGACUUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1100 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGACUAUUCAUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1101 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCAGUCAACGGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1102 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1103 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCCAUGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1104 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1105 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCCCGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1106 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGGGACGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1107 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUGGACACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1108 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUAGGUCGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1109 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGCAGCCGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1110 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1111 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGAAAGCCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1112 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGAGGUGCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1113 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCGUCCGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1114 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGAGGUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1115 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUUGCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1116 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACGUCCUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1117 2001375 filter binding assay \N GCCUACGGCCACAGGACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCCCGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1118 2001375 filter binding assay \N GCCUACGGCCACACCUGGGACAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUAGUCCCACGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1119 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGGGACGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACGUCCUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1120 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGCAUAGUACCUGGAUGGGAGACCGCCUGGGAAUUGCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1121 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUAGGUCGAUGGGAGACCGCGUCCGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1122 2001375 filter binding assay \N GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUACAGGGUCGGGCCUGGUUAGUACCUGCAGCCGAGAGGUGCUGGGAAUACCAGGUGUCGUAGGCUUUAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1123 20095591 SELEX 2/3 of unique sequences don't contain consensus motif, but do have stable secondary structures GGGUGGG 20095591_TFIIIA.txt \N 1 \N \N \N \N \N \N \N \N \N 1124 20095591 filter binding assay \N CAAUUGAACGGCCCGGGUUCUUAACACGUGCCCAUUG \N \N 1 \N \N \N \N \N \N \N \N \N 1125 20095591 filter binding assay \N CAAUUGAACGGCCCGGGUUGAAAACACGUGCCCAUUG \N \N 1 \N \N \N \N \N \N \N \N \N 1126 20095591 filter binding assay \N CAAUUGAACGGCCCGGGUCCUUAAGACGUGCCCAUUG \N \N 1 \N \N \N \N \N \N \N \N \N 1127 20095591 filter binding assay \N CAAUUGAACGGCCCGGCUCCUUGAGACGUGCCCAUUG \N \N 1 \N \N \N \N \N \N \N \N \N 1128 10556305 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1129 10556305 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1130 19789211 genome-wide in vivo immunoprecipitation TAP-chip \N \N GSE17395 \N \N \N \N \N \N \N \N \N \N 1131 18087042 genome-wide in vivo immunoprecipitation TAP-chip \N \N GSE9482; GSE9486 (also see supporting information for gene list) \N \N \N \N \N \N \N \N \N \N 1132 17045609 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1133 17045609 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1134 15252136 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1135 15252136 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1136 12214237 UV cross-linking \N CUCGAGACUAGCAAUACAAAAUGGUAUGUUAAUAUGGACUAAAGGAGGCUUUAAGGACACGUAAUAUUGAGU \N \N \N \N \N \N \N \N \N \N \N \N 1137 9121460 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1138 9121460 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1139 8663113 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1140 8663113 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1141 19250905 genome-wide in vivo immunoprecipitation RIP-chip; Hrb27C \N \N GSE13941 \N \N \N \N \N \N \N \N \N \N 1146 12524544 genome-wide in vivo immunoprecipitation RIP-chip; Yra1 \N \N GSE98; GSE99; GSE100; GSE101; GSE102; GSE103; GSE104 \N \N \N \N \N \N \N \N \N Exp1146.zip 1147 18776931 genome-wide in vivo immunoprecipitation RIP-chip; PUM2 UGUAHAUA \N see supplementary info \N \N \N \N \N \N \N \N \N Exp1147.zip 1144 19250905 genome-wide in vivo immunoprecipitation RIP-chip; sqd \N \N GSE13941 \N \N \N \N \N \N \N \N \N \N 1145 19250905 genome-wide in vivo immunoprecipitation RIP-chip; Hrb98DE \N \N GSE13941 \N \N \N \N \N \N \N \N \N \N 1148 15024427 genome-wide in vivo immunoprecipitation TAP-chip CHUGUAAAUA; UHUGUAHAHUA; WUGUAWYWWUA \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1149 15024427 genome-wide in vivo immunoprecipitation TAP-chip CHUGUAAAUA; UHUGUAHAHUA; WUGUAWYWWUA \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1150 15024427 genome-wide in vivo immunoprecipitation TAP-chip CHUGUAAAUA; UHUGUAHAHUA; WUGUAWYWWUA \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1151 15024427 genome-wide in vivo immunoprecipitation TAP-chip CHUGUAAAUA; UHUGUAHAHUA; WUGUAWYWWUA \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1152 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1153 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1154 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1155 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1156 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1157 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1158 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1159 18978028 genome-wide in vivo immunoprecipitation RIP-chip with FLAG-tagged protein \N \N see supplementary info \N \N \N \N \N \N \N \N \N \N 1160 18829526 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE12215 \N \N \N \N \N \N \N \N \N Exp1160.zip 1161 15257295 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE1361 \N \N \N \N \N \N \N \N \N Exp1161.zip 1162 17925491 genome-wide in vivo immunoprecipitation RIP-chip \N data not released \N \N \N \N \N \N \N \N \N \N 1165 17925491 genome-wide in vivo immunoprecipitation RIP-chip \N data not released \N \N \N \N \N \N \N \N \N \N 1164 17925491 genome-wide in vivo immunoprecipitation RIP-chip \N data not released \N \N \N \N \N \N \N \N \N \N 1166 11121017 genome-wide in vivo immunoprecipitation RIP-chip \N \N \N \N \N \N \N \N \N \N \N \N \N 1167 20639886 genome-wide in vivo immunoprecipitation RIP-chip \N \N E-MEXP-2637; E-MEXP-2640 \N \N \N \N \N \N \N \N \N Exp1167.zip 1169 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1169_19561594_1649_SFRS13A_RRMx1_logo.png 1169_19561594.pwm 1169_19561594.pfm \N 1170 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1170_19561594_1258_ELAVL1_RRMx3_logo.png 1170_19561594.pwm 1170_19561594.pfm \N 1171 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1171_19561594_1233_PTBP1_RRMx4_logo.png 1171_19561594.pwm 1171_19561594.pfm \N 1172 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1172_19561594_1589_RBM4_RRMx2.Znf_CCCHx1_logo.png 1172_19561594.pwm 1172_19561594.pfm \N 1173 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1173_19561594_1448_SFRS1_RRMx2_logo.png 1173_19561594.pwm 1173_19561594.pfm \N 1174 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1174_19561594_1423_KHDRBS3_KHx1_logo.png 1174_19561594.pwm 1174_19561594.pfm \N 1175 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1175_19561594_1274_SNRPA_RRMx2_logo.png 1175_19561594.pwm 1175_19561594.pfm \N 1176 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1176_19561594_2586_Vts1_SAMx1_logo.png 1176_19561594.pwm 1176_19561594.pfm \N 1177 19561594 RNAcompete best PWM by pearson correlation between probe set A and probe set B \N \N \N \N \N \N \N \N 0 1177_19561594_1257_YBX1_CSDx1_logo.png 1177_19561594.pwm 1177_19561594.pfm \N 1178 11950943 genome-wide in vivo immunoprecipitation RIP-chip \N \N short list of genes in paper \N \N \N \N \N \N \N \N \N Exp1178.zip 1179 11719188 genome-wide in vivo immunoprecipitation RIP-chip \N \N see supplementary info \N \N \N \N \N \N \N \N \N Exp1179.zip 1180 19638969 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE11989 \N \N \N \N \N \N \N \N \N Exp1180.zip 1181 19638969 genome-wide in vivo immunoprecipitation RIP-chip \N \N GSE11989 \N \N \N \N \N \N \N \N \N Exp1181.zip 1182 18411299 genome-wide in vivo immunoprecipitation RIP-chip UGUAHAUA \N GSE11301 \N \N \N \N \N \N \N \N \N Exp1182.zip 1183 15353001 genome-wide in vivo immunoprecipitation RIP-chip \N \N supplementary website not accessible \N \N \N \N \N \N \N \N \N \N 1184 18218704 genome-wide in vivo immunoprecipitation RIP-chip \N \N short list of genes in paper \N \N \N \N \N \N \N \N \N Exp1184.zip 1185 17893325 SELEX \N CCCC 17893325_ZBP1.txt \N 1 \N \N 17893325_ZBP1_aligned_1.txt 17893325_ZBP1_motif_1.txt 2 1185_17893325_2661_KHSRP_KHx4_logo.png 1185_17893325.pwm 1185_17893325.pfm \N 1186 17893325 SELEX \N GUCC 17893325_ZBP1.txt \N 1 \N \N 17893325_ZBP1_aligned_2.txt 17893325_ZBP1_motif_2.txt 2 1186_17893325_2661_KHSRP_KHx4_logo.png 1186_17893325.pwm 1186_17893325.pfm \N 1187 14614102 EMSA \N ACAAGAUCUGCGGACUGUUACUGAGCUGCGUUUUACACCCUUUCUUUGACAAAACCUAACUUGCGCAGAAAAAAAAAAUGAGACAUUUGGCAUGGC \N \N \N \N \N \N \N \N \N \N \N \N 1188 15537539 filter binding assay \N GAGACAGUAGAGAAUUGAUACAUGGAUAACUGAAUCUCUUUCAACUAAUAAGAGACAUUAUCACGAAACAAUUGUACAUUUCUCUCCUUGUCUGUGCUAAAUAAACUACAAAUAAAAA \N \N 1 \N \N \N \N \N \N \N \N \N 1189 12592010 protein affinity purification peptide-linked sepharose column GGAGUUCCUGCUUCAACAGUGCUUGGACGGAACUCC \N \N 1 \N \N \N \N \N \N \N \N \N 1190 16760464 genome-wide in vivo immunoprecipitation RIP-chip \N \N data not released 1 \N \N \N \N \N \N \N \N \N 1191 16760464 EMSA \N CUAGACAUAUAUAAUGUAACACUGUACAUGUAAAUAUGGUAC \N \N 1 \N \N \N \N \N \N \N \N \N 1192 20558735 protein affinity purification biotinylated RNA GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCGG \N \N 1 \N \N \N \N \N \N \N \N \N 1193 20558735 protein affinity purification biotinylated RNA CGGUGGCGGCGCGGGCAGAGCAAGGACGCGGCGGAU \N \N 1 \N \N \N \N \N \N \N \N \N 1194 7983023 EMSA \N GUCCUGUUGCCCUGCACUGCGGACGAACGAAUGACUCUCCCUAUAGUGAGUCGUAUUA \N \N 1 \N \N \N \N \N \N \N \N \N 1195 7983023 EMSA \N AUAAUUAUGGAAGGCACUGCUUCCGAUAAUUAUUCUCCCUAUAGUGAGUCGUAUUA \N \N 1 \N \N \N \N \N \N \N \N \N 1196 7983023 UV cross-linking \N GUCCUGUUGCCCUGCACUGCGGACGAACGAAUGACUCUCCCUAUAGUGAGUCGUAUUA \N \N 1 \N \N \N \N \N \N \N \N \N 1197 7983023 UV cross-linking \N AUAAUUAUGGAAGGCACUGCUUCCGAUAAUUAUUCUCCCUAUAGUGAGUCGUAUUA \N \N 1 \N \N \N \N \N \N \N \N \N 1198 9726965 EMSA \N GUUCUUGCUUCAACAGUGUUUGAACGGAAC \N \N 1 \N \N \N \N \N \N \N \N \N 1199 9726965 EMSA \N GAUUAUCGGGAGCAGUGUCUUCCAUAAUC \N \N 1 \N \N \N \N \N \N \N \N \N 1200 9726965 EMSA \N GUCGUUCGUCCUCAGUGCAGGGCAACAU \N \N 1 \N \N \N \N \N \N \N \N \N 1201 9726965 EMSA \N CCUCAUCUUUGUCAGUGCACAAAAUGGCG \N \N 1 \N \N \N \N \N \N \N \N \N 1202 9726965 EMSA \N GUUCUGCUUCAACAGUGUUUGAACGGAAC \N \N 1 \N \N \N \N \N \N \N \N \N 1203 9726965 EMSA \N GUUCUUGCUUCAAUAGUAUUUGAACGGAAC \N \N 1 \N \N \N \N \N \N \N \N \N 1204 15967798 EMSA \N GCCGCUCCAGCGCCGCGCAGCCACCGCCGCCGC \N \N 1 \N \N \N \N \N \N \N \N \N 1205 8633068 SELEX not all sequences reported \N \N \N 1 \N \N \N \N \N \N \N \N \N 1206 2336358 EMSA \N AUCUUGCUUCAACAGUGUUUGGACGGAAC \N \N 1 \N \N \N \N \N \N \N \N \N 1207 2336358 EMSA \N AAUUAUCGGAAGCAGUGCCUUCCAUAAUU \N \N 1 \N \N \N \N \N \N \N \N \N 1208 2336358 EMSA \N CAUUAUCGGGAGCAGUGUCUUCCAUAAUG \N \N 1 \N \N \N \N \N \N \N \N \N 1209 1644834 EMSA \N UCUUGCUUCAACAGUGUUUGGACGGAACAGG \N \N 1 \N \N \N \N \N \N \N \N \N 1210 1644834 EMSA \N UCUUGCGAGUACAGUGUUAUUCCAGAACAGG \N \N 1 \N \N \N \N \N \N \N \N \N 1211 1644834 EMSA \N UCUUGCUUCAAACAGUGUCUUGGACGGAACAGA \N \N 1 \N \N \N \N \N \N \N \N \N 1212 1644834 EMSA \N UCUUGCUUCAAGCAGUGUCUUGGACGGAACAGA \N \N 1 \N \N \N \N \N \N \N \N \N 1213 8021254 SELEX SELEX was performed on a doped pool with conserved structure; motif is present in a stem-loop with a conserved C 6 bases 5' to the loop. CAGUGN 8021254_IREBP.txt \N 1 \N \N 8021254_IREBP_aligned.txt 8021254_IREBP_motif.txt 1 1213_8021254_2664_ACO1__logo.png 1213_8021254.pwm 1213_8021254.pfm \N 1214 19800271 ELISA with biotinylated RNA \N GCGGGUCUGUCUCUUGCUUCAACAGUGUUUGGACGGAACA \N \N 1 \N \N \N \N \N \N \N \N \N 1215 16041388 SELEX Half-site matrix derived from probability matrix logo image, see also full site (exp149) NACUAAY(N)(2-20)UAAY 16041388_QK1.txt \N \N \N also see image in PWM dir \N \N 0 \N 1215_16041388.pwm 1215_16041388.pfm \N 1216 19457263 SELEX Bipartite motif, also see ExpID1216; PFM and PWM derived from logo reported in paper AWAA(N)(2-24)AWAA 19457263_slm-2.txt \N \N 0 see image in PWM dir \N \N 0 \N 1216_19457263.pwm 1216_19457263.pfm \N 1217 15351640 yeast three-hybrid screen PWM is matrix reported in paper; note tripartite motif (also see ExpIDs 816 and 1218) CCAUC(N)(2-7)WCCCW(N)(7-18)UCAYC \N \N \N \N \N \N \N \N \N 1217_15351640.pwm \N \N 1218 15351640 yeast three-hybrid screen PWM is matrix reported in paper; note tripartite motif (also see ExpIDs 816 and 1217) CCAUC(N)(2-7)WCCCW(N)(7-18)UCAYC \N \N \N \N \N \N \N \N \N 1218_15351640.pwm \N \N 1219 11782412 yeast three-hybrid assay \N ACCCAACCCAACGGCCCUCUUUAGGGCCACAAAU \N \N 1 \N \N \N \N \N \N \N \N \N 1220 15105376 protein affinity purification biotinylated RNA ACAUGCAUAAUUGCAAUUUCACAUUUUUGAUCUACACCGACUGCCAAUCCGGUUUUGUUUUAUUGAACUCUCACUAAUUCGGCCGUCUUCGAUGUUUGCAGAGCGCUCAUUCACUUCUUAUUAUACUCACUUCAACUAACAAUGUCAUCGAUUUCAAUUUUCGAUGAAAUCCUUCUCCCAACAGAUAUUUCUGUUCCUACUGGUCUCCGUCUUCGUGCUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 1221 15105376 protein affinity purification biotinylated RNA ACUUGCAUAAUUGCAAUUUCACAUUUUUGAUCUACACCGACUGCCAAUCCGGUUUUGUUUUAUUGAACUCUCACUAAUUCGGCCGUCUUCGAUGUUUGCAGAGCGCUCAUUCACUUCUUAUUAUACUCACUUCAACUAACAAUGUCAUCGAUUUCAAUUUUCGAUGAAAUCCUUCUCCCAACAGAUAUUUCUGUUCCUACUGGUCUCCGUCUUCGUGCUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 1222 15105376 protein affinity purification biotinylated RNA ACAUGCAUAAUUGCAAUUUCACAUUUUUGAUCUACACCGACUGCCAAUCCGGUUUUGUUUUAUUGAACUCUCACUAAUUCGGCCGUCUUCGUUGUUUGCAGAGCGCUCAUUCACUUCUUAUUAUACUCACUUCAACUAACAAUGUCAUCGAUUUCAAUUUUCGAUGAAAUCCUUCUCCCAACAGAUAUUUCUGUUCCUACUGGUCUCCGUCUUCGUGCUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 1223 15105376 protein affinity purification biotinylated RNA ACUUGCAUAAUUGCAAUUUCACAUUUUUGAUCUACACCGACUGCCAAUCCGGUUUUGUUUUAUUGAACUCUCACUAAUUCGGCCGUCUUCGUUGUUUGCAGAGCGCUCAUUCACUUCUUAUUAUACUCACUUCAACUAACAAUGUCAUCGAUUUCAAUUUUCGAUGAAAUCCUUCUCCCAACAGAUAUUUCUGUUCCUACUGGUCUCCGUCUUCGUGCUCUUC \N \N \N \N \N \N \N \N \N \N \N \N 1224 9393998 yeast three-hybrid assay \N CUAUCUCACUAACGCUUCUUGUGUCAUUCACUUUCGA \N \N \N \N \N \N \N \N \N \N \N \N 1225 15525531 yeast three-hybrid assay \N UCACUAACGCUUCUUGUGUCAUUCCUA \N \N \N \N \N \N \N \N \N \N \N \N 1226 15525531 yeast three-hybrid assay \N CUUAUGUUCUGUUGUUUUGUAAUAUUUUAA \N \N \N \N \N \N \N \N \N \N \N \N 1227 15525531 yeast three-hybrid assay \N GAUUUUAAGAUCGAUGUUGUGCCAUCCCCA \N \N \N \N \N \N \N \N \N \N \N \N 1228 15525531 EMSA \N CUUAUGUUCUGUUGUUUUGUAAUAUUUUAA \N \N \N \N \N \N \N \N \N \N \N \N 1229 9927456 homopolymer binding assay poly(A) (A)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1230 9927456 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1231 9927456 homopolymer binding assay poly(U) (U)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1232 16000383 yeast three-hybrid assay \N CCACCACCAUAACCUCUGUAAAUCUG \N \N \N \N \N \N \N \N \N \N \N \N 1233 16000383 yeast three-hybrid assay \N UUGUUACCUACAUGAUCUGUAUCAUGAUCUGUAUCAUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 1234 16000383 yeast three-hybrid assay \N UUGUUACCUACAUGAUCACAAUCAUGAUCUGUAUCAUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 1235 16000383 yeast three-hybrid assay \N UUGUUACCUACAUGAUCUGUAUCAUGAUCACAAUCAUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 1236 16000383 yeast three-hybrid assay \N AAAGCUUCAUAUCAUGUACUAUUGAAUC \N \N \N \N \N \N \N \N \N \N \N \N 1237 16000383 yeast three-hybrid assay \N UUUUUUCCGAAUCGUUGUGUAAUAAACGUAU \N \N \N \N \N \N \N \N \N \N \N \N 1238 16000383 EMSA \N CCACCACCAUAACCUCUGUAAAUCUG \N \N \N \N \N \N \N \N \N \N \N \N 1239 16000383 EMSA \N UUGUUACCUACAUGAUCUGUAUCAUGAUCUGUAUCAUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 1240 16000383 EMSA \N UUGUUACCUACAUGAUCACAAUCAUGAUCUGUAUCAUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 1241 16000383 EMSA \N UUGUUACCUACAUGAUCUGUAUCAUGAUCACAAUCAUUAUUG \N \N \N \N \N \N \N \N \N \N \N \N 1242 16000383 EMSA \N AAAGCUUCAUAUCAUGUACUAUUGAAUC \N \N \N \N \N \N \N \N \N \N \N \N 1243 17923701 UV cross-linking \N GGGAGAAUUUCUUCCAUGCAUGGUGUGCUUUG \N \N \N \N \N \N \N \N \N \N \N \N 1244 17923701 UV cross-linking \N GGGAGAAUUUCUUCCAUCGAUGGUGUGCUUUG \N \N \N \N \N \N \N \N \N \N \N \N 1245 17923701 UV cross-linking \N GGGAGAAUUUCUUCCAUGCAUGGUCUCCUUUG \N \N \N \N \N \N \N \N \N \N \N \N 1246 17923701 EMSA \N GGGAGAAUUUCUUCCAUGCAUGGUGUGCUUUG \N \N \N \N \N \N \N \N \N \N \N \N 1247 17923701 EMSA \N GGGAGAAUUUCUUCCAUCGAUGGUGUGCUUUG \N \N \N \N \N \N \N \N \N \N \N \N 1248 17923701 EMSA \N GGGAGAAUUUCUUCCAUGCAUGGUCUCCUUUG \N \N \N \N \N \N \N \N \N \N \N \N 1249 18952820 EMSA \N AUUUAUUUAUUUA \N \N \N \N \N \N \N \N \N \N \N \N 1250 18952820 EMSA \N UUUUUUUUUUUUU \N \N \N \N \N \N \N \N \N \N \N \N 1251 18952820 EMSA \N UUAUUCUAGACUAAUAUUGUAAGCUAUAAG \N \N \N \N \N \N \N \N \N \N \N \N 1252 18952820 EMSA \N AUUGUAAGCUAUAAGUUGUAGAAUAAUUAU \N \N \N \N \N \N \N \N \N \N \N \N 1253 18952820 EMSA \N UUUGUAGAAUAAUUAUUGAUCCAAAUCAGAU \N \N \N \N \N \N \N \N \N \N \N \N 1254 18952820 EMSA \N UUGUUUUUUCUCCUUUUCUUUAUAACUUGU \N \N \N \N \N \N \N \N \N \N \N \N 1255 18952820 EMSA \N UUUCUUUAUAACUUGUUACAAUUUUUGAAA \N \N \N \N \N \N \N \N \N \N \N \N 1256 18952820 EMSA \N UUACAAUUUUUGAAAUUCCCUUUUUUGACA \N \N \N \N \N \N \N \N \N \N \N \N 1257 18952820 EMSA \N UUCCCUUUUUUGACAGGCUUUUAUUACACUGUAA \N \N \N \N \N \N \N \N \N \N \N \N 1258 18952820 EMSA \N CUUUAUUUAUUGU \N \N \N \N \N \N \N \N \N \N \N \N 1259 18952820 EMSA \N UUAUUAUUUGUU \N \N \N \N \N \N \N \N \N \N \N \N 1260 18952820 EMSA \N UA(U)(2-3)RD(N)(1-3)G \N \N \N \N \N \N \N \N \N \N \N \N 1261 20427513 EMSA \N UUUAAAAAGUUGUAUGUAAUAAAAGUAAAAUUUAAU \N \N \N \N \N \N \N \N \N \N \N \N 1262 20427513 EMSA \N UUUAAAAAGUUGUAUGUAAUAAAAGUAACCGGGCCG \N \N \N \N \N \N \N \N \N \N \N \N 1277 10617207 UV cross-linking \N UUUUCGAA \N \N \N \N \N \N \N \N \N \N \N \N 1274 16244662 yeast three-hybrid screen \N UGUAHHAUA \N \N \N \N \N \N \N \N \N \N \N \N 1275 15545320 protein affinity purification biotinylated RNA UGUGUGCCUG \N \N \N \N \N \N \N \N \N \N \N \N 1276 10617207 UV cross-linking \N UUUUCAGG \N \N \N \N \N \N \N \N \N \N \N \N 1273 16244662 yeast three-hybrid screen \N UGUANHAUAD \N \N \N \N \N \N \N \N \N \N \N \N 1278 10617207 UV cross-linking \N UUUUCGGG \N \N \N \N \N \N \N \N \N \N \N \N 1279 10617207 UV cross-linking \N UUUUCAAA \N \N \N \N \N \N \N \N \N \N \N \N 1280 10617207 UV cross-linking \N UUUUCGAG \N \N \N \N \N \N \N \N \N \N \N \N 1281 19460348 EMSA \N GUUGUUGUUGUUGUUGUUGUUGUUGUUGUUAAAAAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1282 19460348 homopolymer binding assay poly(G) (G)(n) \N \N \N \N \N \N \N \N \N \N \N \N 1317 21685478 yeast three-hybrid \N AUUUCUAAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1316 21685478 yeast three-hybrid \N AUUUCUAAUAUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1315 21685478 yeast three-hybrid \N AUUUCUAAUUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1314 21685478 yeast three-hybrid \N AUUUCUAAUAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1313 21685478 yeast three-hybrid \N AUUUCUAAUAAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1312 21685478 yeast three-hybrid \N AUUUCUAAUCCAUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1311 21685478 yeast three-hybrid \N AUUUCUAAUAUAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1310 21685478 yeast three-hybrid \N AUUUCUAAUACAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1309 21685478 yeast three-hybrid \N AUUUCUAAUAACAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1308 21685478 yeast three-hybrid \N AUUUCUAAUACCAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1307 21685478 yeast three-hybrid \N AUUUCUAAUAUAUAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1306 21685478 yeast three-hybrid \N AUUUCUAAUACACAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1305 21685478 yeast three-hybrid \N ACACACAAUAAUUAAUUAAUACACACA \N \N \N \N \N \N \N \N \N \N \N \N 1304 21685478 yeast three-hybrid \N ACACAUAAUAAUUAACACACACACACA \N \N \N \N \N \N \N \N \N \N \N \N 1303 21685478 yeast three-hybrid \N ACACAUAAUAAUUAAUACACACACACA \N \N \N \N \N \N \N \N \N \N \N \N 1302 21685478 yeast three-hybrid \N ACAUCUAAUAAUUAAUUAACACACACA \N \N \N \N \N \N \N \N \N \N \N \N 1301 21685478 yeast three-hybrid \N AUUUCUAAUAAUUAAUUAAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1299 21685478 yeast three-hybrid \N AUUUCUAAUAAUUAAUUAAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1295 21685478 EMSA \N UUUAAUUUCUAAUAAUUAAUUAAUUUUUCCUGUGUGUGUG \N \N \N \N \N \N \N \N \N \N \N \N 1300 21685478 yeast three-hybrid \N AUUUCUAAUAAUUAAUACAUUUAUCCU \N \N \N \N \N \N \N \N \N \N \N \N 1293 22819822 genome-wide in vivo immunoprecipitation RIP-chip \N \N data not released \N \N \N \N \N \N \N \N \N \N 1292 17507411 protein affinity purification biotinylated RNA ACAUACUAACAC \N \N 1 \N \N \N \N \N \N \N \N \N 1290 17507411 protein affinity purification biotinylated RNA CCCCUACUAACACGCACCCCUAGGGG \N \N 1 \N \N \N \N \N \N \N \N \N 1291 17507411 protein affinity purification biotinylated RNA CCCCUACUAACACGGACAACGUAGGGG \N \N 1 \N \N \N \N \N \N \N \N \N 1289 17507411 protein affinity purification biotinylated RNA CCCCCGGCACATACTAACACACCGGGGG \N \N 1 \N \N \N \N \N \N \N \N \N 1288 17507411 protein affinity purification biotinylated RNA CUACUAACCCCAACC \N \N 1 \N \N \N \N \N \N \N \N \N 1287 17507411 protein affinity purification biotinylated RNA CCCCCGGGTTTTTAGTATGTGCCGGGGGGTAGAAGAAGGGCTGACTGG \N \N 1 \N \N \N \N \N \N \N \N \N 1286 17507411 protein affinity purification biotinylated RNA CCCCCGGGTTTTAGTATGTGCCGGGGGTAGAAGAAGGGCTGACTGG \N \N 1 \N \N \N \N \N \N \N \N \N 1285 19304800 SELEX \N AGGUAA(N)(1-2)AGGUAA; AGGUAA(N)(6-10)AGGUAA 19304800_ZRANB2.txt \N \N \N \N 19304800_ZRANB2_aligned.txt 19304800_ZRANB2_motif.txt 1 1285_19304800_2917_ZRANB2_Znf_RanBP2x2_logo.png 1285_19304800.pwm 1285_19304800.pfm \N 1284 11895477 SELEX \N (UR)(3-5) \N \N \N \N \N \N \N \N \N \N \N \N 1296 21685478 EMSA \N AAUUUCUAAUAAUUAAUACAUUUUUCCUCU \N \N \N \N \N \N \N \N \N \N \N \N 1297 21685478 EMSA \N AAUUUCUAAUAUAUAUUAAUACAUUUUUCCUGUGUGUGUG \N \N \N \N \N \N \N \N \N \N \N \N 1298 21685478 EMSA \N AGAAAAUCUAAAUAAUAAAUAAAUAAAAAA \N \N \N \N \N \N \N \N \N \N \N \N 1283 15867372 EMSA \N CAUUGGCUCACGCACUGUGAGAUUUUGUUUUUAUACUUGGAAGUGGU \N \N \N \N \N \N \N \N \N \N \N \N