RBPDB Release Notes ==================================================================================================== 09.27.2012 - v1.3 ==================================================================================================== - Corrected typo in SELEX experiment (experiment id: 212) for KHDRBS3 ASAA(N)(2-24)ASAA --> AWAA(N)(2-24)AWAA ==================================================================================================== 09.27.2012 - v1.3 ==================================================================================================== - Removed erroneous UAGGGW motif from experiments for HNRNPK, PCBP2, SSB due to copy/paste error (experiment ids: 1162,1164,1165 PMID: 17925491) - Added missing gene names for PPP1R10 (protein id: 1675), PRR3 (protein id: 1676), ZRSR1 (protein id: 1686) - Corrected domain annotations for accuracy and consistency (protein ids 1617,1589,1588,1287,1645,1461,1425,1578,1574,1619,1584,1289,1468,1269,1595,1623,1445, 1611,1282,1397,1606,1434,1244,1307,1945,1968,1969,2171,2165,1934,1849,1979,1826,2098,2151,1907, 1926,2077,1761,2056,1940,2013,1735,2503,2176,1777,2091,2043,1766,2300,2235,2352,2227,2225,2301, 2422,2368,2386,2203,2401,2794,2894,2906) - Removed CG12477 (protein id: 2370) due to domain annotation change - Experiments added: PMID:17507411,PMID:22819822,PMID:21685478 ==================================================================================================== 07.19.2011 - v1.2.2 ==================================================================================================== Fixed typo in motif for puf5 Y3H experiment (experiment id: 305 PMID: 18579869) CYCUCUAYYYUGU --> CYCUGUAYYYUGU ==================================================================================================== 01.25.2011 - v1.2.1 ==================================================================================================== Bugfixes to sequence scan functionality: - A bug that caused some sites not to be detected has been corrected - A bug that caused gene names not to be displayed in the result has been corrected Thanks to Gerhart Ryffel for bringing this bug to our attention. ==================================================================================================== 11.23.2010 - v1.2 ==================================================================================================== Current stats: Proteins 1171 Human 424 Mouse 413 Fly 258 Worm 244 Experiments 1456 PWMs 73 Data added since last version: - 7 new in vivo datasets - Experiments added: PMID:15867372,PMID:11895477,PMID:19304800 - Proteins added: ENSG00000111640,ENSG00000132485 Data updates: - Changed experiments on Smaug to reflect reports of binding structured RNA - Updated experiment for PMID:16537387 to include PWM from IP data - Removed pseudogenes: ENSG00000197955 ENSG00000225001 ENSG00000227087 ENSG00000231167 ENSG00000233556 ENSG00000206228 ENSG00000213300 ENSG00000214754 ENSG00000215507 ENSG00000224657 Bugfixes and site changes: - Fixed broken links to readme and some download files - added quicksearch for experiments (by PMID, experiment type, or motif) to top menu Thanks to Joel Mackay for data submission. ==================================================================================================== 08.10.2010 - v1.1 ==================================================================================================== Current stats: Proteins 1169 Human 422 Mouse 413 Fly 258 Worm 244 Experiments 1453 PWMs 71 Data added since last version: - C.elegans data added - TROVE domain data added ==================================================================================================== 14.08.2010 - v1.0 - initial release ==================================================================================================== Site is online